PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004400
Common NameLOC102581700
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 336aa    MW: 37541.7 Da    PI: 6.7897
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004400genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.52.6e-12556147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                          + +WT eE++ l+ +v+++G+g+Wk I r         +R+  ++k++w++ 
  PGSC0003DMP400004400  5 KVKWTSEEEDALKAGVTKHGSGRWKNILRDPEfalvlINRSNIDLKDKWRNM 56
                          579*********************************999***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.648161IPR017930Myb domain
SuperFamilySSF466892.3E-15259IPR009057Homeodomain-like
SMARTSM007176.4E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-13557IPR009057Homeodomain-like
PfamPF002492.5E-8555IPR001005SANT/Myb domain
CDDcd116602.51E-19657No hitNo description
SMARTSM005262.5E-14112177IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150422.582114182IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467852.07E-13115182IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.3E-11115181IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.9E-9116175IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGNPKVKWTS EEEDALKAGV TKHGSGRWKN ILRDPEFALV LINRSNIDLK DKWRNMCIYT  60
TGQGSKDKSI VVRSRPMELD AFVPSPIQSL PPITSAFENE AIEDSPKIPQ EGLNAPKYND  120
LIFEALSSMR DSNGSDLGAI VGFIEQRHEV PPNFRRFLSS KLRRLVMQGK LEKVEKCYKM  180
KDASLETNIP TPKQNDVRSW PVPNSVPRQN DVPSWPVPNS APKQNDVLSW PVLNSAPKQN  240
DVRSWSVPNM APKQNDVRSW QVPNSAVKVS SGTAEEAARI ASDRVADAEN KRCLEVAAVR  300
DADMKLEMAE EAELMLQIIK EIYDHCSQGE IILLA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342962.10.0PREDICTED: single myb histone 4-like
TrEMBLM0ZR820.0M0ZR82_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000063690.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-51MYB_related family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]