PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004679
Common NameLOC102580476
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 836aa    MW: 91881.2 Da    PI: 6.4668
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004679genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox598.1e-191573357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                          k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  PGSC0003DMP400004679 15 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 73
                          5679*****************************************************97 PP
2START173.61.2e-541593672205
                           HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS
                 START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 
                           +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +e+l+v+ ++  
  PGSC0003DMP400004679 159 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVSEILKDRPSWYRDCRVVEVLNVLPTAng 246
                           789*******************************************************.9999999999****************9999 PP

                           EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
                 START  89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173
                           g+++l +++l+a+++l+p Rdf+ +Ry+  + +g++v++++S+ ++q+ p+    +++vRae lpSg+li+p+++g+s +++v+h++l+
  PGSC0003DMP400004679 247 GTIELLYMQLYAPTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVQNFVRAEILPSGYLIRPCEGGGSIIHIVDHMNLE 335
                           ************************************************99988899********************************* PP

                           SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
                 START 174 grlphwllrslvksglaegaktwvatlqrqce 205
                           +++++++lr+l++s+++ ++kt+va+l+++++
  PGSC0003DMP400004679 336 AWSVPEVLRPLYESSAVLAQKTTVAALRYLRQ 367
                           ***************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3541074IPR001356Homeobox domain
SMARTSM003895.2E-161278IPR001356Homeobox domain
SuperFamilySSF466897.7E-171477IPR009057Homeodomain-like
CDDcd000867.93E-171575No hitNo description
PfamPF000462.2E-161673IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-181773IPR009057Homeodomain-like
CDDcd146861.36E-667106No hitNo description
PROSITE profilePS5084826.27149377IPR002913START domain
CDDcd088753.23E-75153369No hitNo description
SMARTSM002341.0E-42158368IPR002913START domain
Gene3DG3DSA:3.30.530.208.1E-23158363IPR023393START-like domain
SuperFamilySSF559612.88E-37158370No hitNo description
PfamPF018521.8E-52159367IPR002913START domain
PfamPF086703.7E-50691834IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MASCKDGKSV LDNGKYVRYT PEQVEALERL YHDCPKPSSM RRQQLIRECP ILSNIEPKQI  60
KVWFQNRRCR EKQRKEASRL QSVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYFRRQSH  120
STPLATKDTS CDSVVTSGQH HLTSQHPPRD ASPAGLLSIA EETLTEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIIAISHGC TGVAARACGL VGLEPTRVSE ILKDRPSWYR DCRVVEVLNV  240
LPTANGGTIE LLYMQLYAPT TLAPARDFWL LRYTTVMDDG SLVVCERSLG NTQNGPSMPP  300
VQNFVRAEIL PSGYLIRPCE GGGSIIHIVD HMNLEAWSVP EVLRPLYESS AVLAQKTTVA  360
ALRYLRQIAQ EVSQTNVTNW GRRPAALRAL SQRLSRGFNE ALNGIADEGW SMLDSDGMDD  420
VTILVNSSPD KLMGLNLPFA NGFSPMSNAV MCAKASMLLQ NVPPAILLRF LREHRSEWAD  480
NNIDAYAAAA IKVGPCSLPG ARVGNFGGQV ILPLAHTVEH EELLEVIKLE GHSPEDAIMP  540
RDMFLLQLCS GMDENAVGTC AELVFAPIDA SFADDAPLLP SGFRIISLES GKEASSPNRT  600
LDLTSALETG PAENKAANDL HTSGGSSRSV MTIAFQFAFE SHMQESVASM ARQYVRSIIS  660
SVQRVALALS PSHLGSHGGL RLPLGTPEAH TLARWICQSY RCFLGVELLK SNTDQGSESI  720
LKSLWHHSDA IICCSAKALP VFTFANQAGL DMLETTLVAL QDITLEKIFD DHGKKNLCTE  780
FPQIMQQGFA CLQGGICLSS MSRPISYERA VAWKVMNEED TAHCICFMFV NWSFV*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004679
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869250.0JQ686925.1 Nicotiana tabacum cultivar SR1 homeobox-leucine zipper protein ATHB-15-like protein (HB15) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343047.10.0PREDICTED: homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLM0ZRW90.0M0ZRW9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000067350.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45724140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]