PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400004700

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

HD-ZIP

Protein Properties

Length: 767aa MW: 85240 Da PI: 6.6254

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400004700	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	65.9	5.4e-21	113	168	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r+k +++t +q++e+e+lF+++++p++++r++L+k+lgL rqVk+WFqNrR++ k PGSC0003DMP400004700 113 RKKYHRHTVQQIREMEALFKESPHPDEKQRQQLSKQLGLHPRQVKFWFQNRRTQIK 168 7999************************************************9877 PP
2	START	197.5	6.1e-62	287	503	3	206
HHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.....SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EE CS START 3 aeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv....dsgealrasgvvdmvlallveellddkeqWdetla....ka 79 ++a+++l k+a+++ep+W ks e++n+de++++f++++v +ea+r++g+v+m+l++lv++++d++ qW e+++ ka PGSC0003DMP400004700 287 VNQAMEQLTKMATSGEPLWIKSFetgrEILNYDEYTKEFPPGDVkskrMCIEASRDTGIVFMELPRLVQTFMDVN-QWREMFPsiisKA 374 5789****************99****************999999*********************.********* PP EEEEEECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEE CS START 80 etlevissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvt 165 +t++vi++g ga a +l+p+v R+++fvRy++q++a +w ivdvSvd + ++s+ ++++lpSg+++++ sn h+kvt PGSC0003DMP400004700 375 ATVDVICNGteGANSWDGAVQLMLTPVVGtREVYFVRYCKQMSAAQWGIVDVSVDKVEGSI-DASLLKCRKLPSGCILQEQSNAHCKVT 462 ******98889999999999*******************************87.9********************** PP EEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 166 wvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 wveh +++++++++l+r++v+sg+a+ga++w+atlq+qce+ PGSC0003DMP400004700 463 WVEHLECQKSIVDSLYRVTVNSGQAFGARRWMATLQQQCER 503 *************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.6E-22	97	164	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.61E-21	98	171	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.799	110	170	IPR001356	Homeobox domain
SMART	SM00389	1.9E-18	112	174	IPR001356	Homeobox domain
Pfam	PF00046	2.7E-18	113	168	IPR001356	Homeobox domain
CDD	cd00086	2.12E-16	117	168	No hit	No description
PROSITE pattern	PS00027	0	145	168	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	34.772	276	506	IPR002913	START domain
SuperFamily	SSF55961	7.0E-28	278	503	No hit	No description
CDD	cd08875	1.24E-98	280	502	No hit	No description
SMART	SM00234	1.9E-55	285	503	IPR002913	START domain
Pfam	PF01852	1.5E-49	287	503	IPR002913	START domain
SuperFamily	SSF55961	1.92E-12	546	754	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009957	Biological Process	epidermal cell fate specification
GO:0010062	Biological Process	negative regulation of trichoblast fate specification
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 767 aa Download sequence Send to blast
MVVVDMSNNH PPSHETKDFF PSPALSLSLA GIFRDGGGAG SSAGNMETTE EVDEGSAAAS 60 RGGRPREETS TVEISSENSE QMRSRGSDDD LEHDDTCNED EEDPNNNSKK KKRKKYHRHT 120 VQQIREMEAL FKESPHPDEK QRQQLSKQLG LHPRQVKFWF QNRRTQIKAI QERHENSLLK 180 AEIEKLREEN KGLRGTSKNP SCPNCGFASS SNNAPTLPAE EQQLRIENAR LRAEVEKLRA 240 ALGKYPLGTS PNSSSSCSGG NDEENKSALD FYTGIFGLEK PRIMHIVNQA MEQLTKMATS 300 GEPLWIKSFE TGREILNYDE YTKEFPPGDV KSKRMCIEAS RDTGIVFMEL PRLVQTFMDV 360 NQWREMFPSI ISKAATVDVI CNGTEGANSW DGAVQLMLTP VVGTREVYFV RYCKQMSAAQ 420 WGIVDVSVDK VEGSIDASLL KCRKLPSGCI LQEQSNAHCK VTWVEHLECQ KSIVDSLYRV 480 TVNSGQAFGA RRWMATLQQQ CERLLFFMAT NIPTKDTTGV ATLAGRKSIL TLAQRMTWGF 540 YRVLGASSYN TWNKVPSKTG QEDIRMTSRR NLTDPGEPQG LILCAVSSIW LPVSRNVLFD 600 FLKDENHRHE WDVMSNGGPV QSVANLAKGQ DKGNAVSIQA VKLRENNMWI LQDTCTNAYE 660 SAVVYAPVDI AGMQSVITGC DSSNIAVLPS GFSILPDGLE SRPFVITSRP EDRSSEGGSL 720 LTVAFQILTS NSPTTKLSKE SVESINNLLS CTLHKIKTRF QCDNGY*

Sequence ? help Back to Top

Protein Sequence Length: 767 aa Download sequence Send to blast

MVVVDMSNNH PPSHETKDFF PSPALSLSLA GIFRDGGGAG SSAGNMETTE EVDEGSAAAS  60
RGGRPREETS TVEISSENSE QMRSRGSDDD LEHDDTCNED EEDPNNNSKK KKRKKYHRHT  120
VQQIREMEAL FKESPHPDEK QRQQLSKQLG LHPRQVKFWF QNRRTQIKAI QERHENSLLK  180
AEIEKLREEN KGLRGTSKNP SCPNCGFASS SNNAPTLPAE EQQLRIENAR LRAEVEKLRA  240
ALGKYPLGTS PNSSSSCSGG NDEENKSALD FYTGIFGLEK PRIMHIVNQA MEQLTKMATS  300
GEPLWIKSFE TGREILNYDE YTKEFPPGDV KSKRMCIEAS RDTGIVFMEL PRLVQTFMDV  360
NQWREMFPSI ISKAATVDVI CNGTEGANSW DGAVQLMLTP VVGTREVYFV RYCKQMSAAQ  420
WGIVDVSVDK VEGSIDASLL KCRKLPSGCI LQEQSNAHCK VTWVEHLECQ KSIVDSLYRV  480
TVNSGQAFGA RRWMATLQQQ CERLLFFMAT NIPTKDTTGV ATLAGRKSIL TLAQRMTWGF  540
YRVLGASSYN TWNKVPSKTG QEDIRMTSRR NLTDPGEPQG LILCAVSSIW LPVSRNVLFD  600
FLKDENHRHE WDVMSNGGPV QSVANLAKGQ DKGNAVSIQA VKLRENNMWI LQDTCTNAYE  660
SAVVYAPVDI AGMQSVITGC DSSNIAVLPS GFSILPDGLE SRPFVITSRP EDRSSEGGSL  720
LTVAFQILTS NSPTTKLSKE SVESINNLLS CTLHKIKTRF QCDNGY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	108	113	KKKKRK
2	108	114	KKKKRKK
3	110	114	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269\|PubMed:11844112}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400004700

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Down-regulated by GEM. {ECO:0000269\|PubMed:17450124}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975515	1e-176	HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006343080.1	0.0	PREDICTED: homeobox-leucine zipper protein GLABRA 2
Swissprot	P46607	0.0	HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBL	M0ZRY4	0.0	M0ZRY4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400006770	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79840.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400004700

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Wu R,Citovsky V Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development. Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553 [PMID:28526410]