PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400004971
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 227aa    MW: 25922 Da    PI: 4.7711
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400004971genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.3e-091661982355
                           SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
              Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                           +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  PGSC0003DMP400004971 166 PYPTEEEKNRLSEMTGLDQKQINNWFINQRKRH 198
                           8*****************************885 PP
2ELK39.41.3e-13118139122
                   ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                           ELK++L+rKYsgyL+sL++EF+
  PGSC0003DMP400004971 118 ELKEMLMRKYSGYLSSLRKEFL 139
                           9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012562.3E-262071IPR005541KNOX2
PfamPF037912.7E-252370IPR005541KNOX2
SMARTSM011883.1E-7118139IPR005539ELK domain
PfamPF037891.3E-10118139IPR005539ELK domain
PROSITE profilePS5121311.383118138IPR005539ELK domain
PROSITE profilePS5007112.698138201IPR001356Homeobox domain
SuperFamilySSF466898.13E-20140210IPR009057Homeodomain-like
SMARTSM003891.3E-12140205IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.5E-27143203IPR009057Homeodomain-like
CDDcd000861.77E-12150202No hitNo description
PfamPF059204.9E-17158197IPR008422Homeobox KN domain
PROSITE patternPS000270176199IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MTSILEEISN ENNLISSSCH SSEIGADPEL DKFMESYCAV LVKYKEELSK PFDEATSFLN  60
NIKSQLSSLC KDNLITSTSF NSNNNYISDE AGGTSEEDLG CEEMEAADSP ANREGDNELK  120
EMLMRKYSGY LSSLRKEFLK KRKKGKLPKE ARIVLLDWWN THYRWPYPTE EEKNRLSEMT  180
GLDQKQINNW FINQRKRHWR PSEDMKFALM EGVSAGSMYF DGSGGT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133142LRKEFLKKRK
2139143KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400004971
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4776910.0KJ477691.1 Solanum tuberosum class I knox protein (KN1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275325.11e-166homeobox protein knotted-1-like 1-like
SwissprotQ9FP291e-79KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLM0ZSK21e-166M0ZSK2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000071591e-167(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.15e-60KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]