PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005110
Common NameLOC102588206
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB
Protein Properties Length: 328aa    MW: 37798.2 Da    PI: 6.6697
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005110genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93e-151461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          +g+WT +Ed++l+ +v+++G g+W+  + + g+ R++ +c++rw +yl
  PGSC0003DMP400005110 14 KGPWTHDEDQKLLAYVEEHGYGSWSDLPLRAGLQRCGRSCRLRWINYL 61
                          79********************************************97 PP
2Myb_DNA-binding544e-1767112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg+++ eE+  + +++++lG++ W+tIa++++ +R+++++k++w+++l
  PGSC0003DMP400005110  67 RGKFSSEEERTIFKLHALLGNR-WSTIASHLP-NRSDNEIKNYWNTHL 112
                           89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.9E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.175961IPR017930Myb domain
SuperFamilySSF466894.49E-3011108IPR009057Homeodomain-like
SMARTSM007172.5E-101363IPR001005SANT/Myb domain
PfamPF002495.3E-141461IPR001005SANT/Myb domain
CDDcd001671.26E-81661No hitNo description
PROSITE profilePS5129425.91862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-2665117IPR009057Homeodomain-like
SMARTSM007174.6E-1766114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
CDDcd001673.20E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGRSPCLDKE GLKKGPWTHD EDQKLLAYVE EHGYGSWSDL PLRAGLQRCG RSCRLRWINY  60
LRPNIKRGKF SSEEERTIFK LHALLGNRWS TIASHLPNRS DNEIKNYWNT HLKKRLINMG  120
IDPMTHQPKR DGSDYKSIAS LSHMAEWETA RLEAEARLVR NRSTYNNNNN NNNDNNNNPY  180
HRPHNNLQRI PCLDILKAWQ MSRTNVLTLN DISAILLDGF IKNTRTKICD STTRSTFNNI  240
EENVEVGEDL CIFEDTMRKD NDIQTEFSII EDLDELFPEY GCSQNPGNYS SEVQIDSCFG  300
NFEDNKSTNW NNIAHVVMTS PIGSPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005110
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4686390.0CU468639.4 S.lycopersicum DNA sequence from clone SL_MboI-101P13 on chromosome 4, complete sequence.
GenBankHG9755160.0HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344330.10.0PREDICTED: transcription factor MYB51-like
SwissprotQ9LE632e-86MY106_ARATH; Transcription factor MYB106
TrEMBLM0ZSU00.0M0ZSU0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000073360.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.13e-85myb domain protein 16
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]