PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005130
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 143aa    MW: 17163.5 Da    PI: 9.5916
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005130genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.35.4e-184093356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          k++++ ++q+e Le+ Fe ++++  e++ +LAk++gL+ rqV +WFqNrRa+ k
  PGSC0003DMP400005130 40 KKRRLLPKQVEFLEKSFEVENKLEPERKVQLAKETGLQPRQVAIWFQNRRARCK 93
                          45577899********************************************99 PP
2HD-ZIP_I/II121.63.9e-3939130192
           HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                           ekkrrl  +qv++LE+sFe e+kLeperKv+la+e glqprqva+WFqnrRAR ktkqlEk+y++Lk+++d+lk++ + L ke+e+Lr+
  PGSC0003DMP400005130  39 EKKRRLLPKQVEFLEKSFEVENKLEPERKVQLAKETGLQPRQVAIWFQNRRARCKTKQLEKNYDVLKASFDKLKTQYDCLFKENESLRN 127
                           69**************************************************************************************9 PP

           HD-ZIP_I/II  90 elk 92 
                           e++
  PGSC0003DMP400005130 128 EVN 130
                           986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-192597IPR009057Homeodomain-like
PROSITE profilePS5007116.523595IPR001356Homeobox domain
SMARTSM003894.8E-183899IPR001356Homeobox domain
CDDcd000863.39E-134096No hitNo description
PfamPF000462.7E-154093IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.5E-2042102IPR009057Homeodomain-like
PRINTSPR000311.2E-56675IPR000047Helix-turn-helix motif
PROSITE patternPS0002707093IPR017970Homeobox, conserved site
PRINTSPR000311.2E-57591IPR000047Helix-turn-helix motif
PfamPF021835.9E-1595133IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MVNFDQDQVQ KSKMRSFLVQ LDQDDNNSND DNYNYHQSEK KRRLLPKQVE FLEKSFEVEN  60
KLEPERKVQL AKETGLQPRQ VAIWFQNRRA RCKTKQLEKN YDVLKASFDK LKTQYDCLFK  120
ENESLRNEVN LVKKSFIHYL NI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18795RRARCKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator involved in leaf development. Binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:8535134}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005130
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754431e-175HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344287.17e-77PREDICTED: homeobox-leucine zipper protein HAT5-like
SwissprotQ022839e-38HAT5_ARATH; Homeobox-leucine zipper protein HAT5
TrEMBLM0ZSV83e-98M0ZSV8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000073763e-76(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.15e-40homeobox 1
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Arce AL,Chan RL
    A uORF Represses the Transcription Factor AtHB1 in Aerial Tissues to Avoid a Deleterious Phenotype.
    Plant Physiol., 2017. 175(3): p. 1238-1253
    [PMID:28956754]