PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005168
Common NameLOC102593439
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 96aa    MW: 10627.9 Da    PI: 7.3652
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005168genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.12.7e-0721621454
                          HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                          d+i +  ++L+ l+P+ +s  +s K++ + +L+++++YI+sL
  PGSC0003DMP400005168 21 DQIADLVSKLQLLIPEsRSTRSSDKVEASKVLQETCNYIRSL 62
                          6899999*********888999999***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.832762IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.9E-72177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-72180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-42162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MSNRRTRGSR QSSGASRISD DQIADLVSKL QLLIPESRST RSSDKVEASK VLQETCNYIR  60
SLHREVEDLS DRLSVLLEST ESDSAQAAII RSLFM*
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005168
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU4686397e-69CU468639.4 S.lycopersicum DNA sequence from clone SL_MboI-101P13 on chromosome 4, complete sequence.
GenBankHG9754437e-69HG975443.1 Solanum pennellii chromosome ch04, complete genome.
GenBankHG9755167e-69HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344270.12e-60PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX11e-37PRE5_ARATH; Transcription factor PRE5
TrEMBLM0ZSZ34e-59M0ZSZ3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000074306e-60(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.15e-40bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]