PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400005200

Common Name

LOC102597616

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

YABBY

Protein Properties

Length: 195aa MW: 22097.9 Da PI: 8.0961

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400005200	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	192.7	1.7e-59	9	160	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesas 93 ++seq+Cy+ CnfCn +l+vsvP + l+ +vtvrCGhCt+l svn+a a + + ++h ++ l+++ ++ +++ + k ++ s PGSC0003DMP400005200 9 TNSEQLCYIPCNFCNIVLVVSVPCSNLLDIVTVRCGHCTNLWSVNMAAAFHSNSWQNH-----HPYLHHQVGNYTNS-PHDQYKIDCGS 91 579**********************************************9999998.....44454444433332.23333444444 PP YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +s+++ n+++e v+rPPekrqr Psayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+i fgl PGSC0003DMP400005200 92 SSITN-----NSTHEER---IVNRPPEKRQRGPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIQFGL 160 44444.....3333322...379**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.6E-67	10	160	IPR006780	YABBY protein
SuperFamily	SSF47095	3.4E-8	103	154	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.2E-4	108	154	IPR009071	High mobility group box domain
CDD	cd00084	2.20E-4	114	150	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MSSSYIDSTN SEQLCYIPCN FCNIVLVVSV PCSNLLDIVT VRCGHCTNLW SVNMAAAFHS 60 NSWQNHHPYL HHQVGNYTNS PHDQYKIDCG SSSITNNSTH EERIVNRPPE KRQRGPSAYN 120 QFIKEEIQRI KANNPDITHR EAFSTAAKNW AHFPHIQFGL MLETDNQAKL GASENKEKLI 180 MHRAALPKIK TFTF*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400005200

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667743	1e-75	KJ667743.1 Solanum melongena YAB5 protein mRNA, complete cds.
GenBank	KJ667744	1e-75	KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.
GenBank	KJ667745	1e-75	KJ667745.1 Solanum aethiopicum YAB5 protein mRNA, complete cds.
GenBank	KJ667746	1e-75	KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds.
GenBank	KJ667747	1e-75	KJ667747.1 Solanum torvum YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006345225.1	1e-146	PREDICTED: axial regulator YABBY 5-like
Swissprot	Q8GW46	9e-77	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	M0ZT20	1e-145	M0ZT20_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400007474	1e-145	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	4e-79	YABBY family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400005200
Entrez Gene	102597616

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]