PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400005367

Common Name

LOC102605344

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

YABBY

Protein Properties

Length: 179aa MW: 20141.8 Da PI: 9.2748

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400005367	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	228	2.4e-70	10	172	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 ssse++Cy+qCnfCntil+vsvP + ++++vtvrCGhC++++svn+ q+l+ ++ ++l+ ++ + +++++n+k + ++++s+ PGSC0003DMP400005367 10 SSSSERLCYLQCNFCNTILVVSVPCSNMLTLVTVRCGHCANMFSVNIGSLIQALPLQDV--QKLQRQQYTNVENNSSNYKAYGSSSSSS 96 6899**************************************************996..6677777888888888888888887777 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s++ + ++ s + e pr+pp i+PPekrqrvPsaynrfikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl PGSC0003DMP400005367 97 SSKFNRYS-SIVSPEFEPRIPP-IHPPEKRQRVPSAYNRFIKEEIQRIKATNPEISHREAFSTAAKNWAHFPHIHFGL 172 77776655.7777788899999.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.4E-71	12	172	IPR006780	YABBY protein
SuperFamily	SSF47095	6.55E-8	117	165	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	5.9E-5	121	166	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence Send to blast
MSFDMTFSSS SSSERLCYLQ CNFCNTILVV SVPCSNMLTL VTVRCGHCAN MFSVNIGSLI 60 QALPLQDVQK LQRQQYTNVE NNSSNYKAYG SSSSSSSSKF NRYSSIVSPE FEPRIPPIHP 120 PEKRQRVPSA YNRFIKEEIQ RIKATNPEIS HREAFSTAAK NWAHFPHIHF GLKLEGNK*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400005367

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU557674	0.0	EU557674.1 Solanum lycopersicum FAS protein (fasciated) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006340315.1	1e-130	PREDICTED: putative axial regulator YABBY 2
Swissprot	Q9XFB0	3e-66	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	M0ZTF6	1e-129	M0ZTF6_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400007731	1e-130	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	4e-63	YABBY family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400005367
Entrez Gene	102605344

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]