PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005473
Common NameLOC102579355
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 198aa    MW: 22334.4 Da    PI: 5.0963
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005473genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS189.62.1e-581182193374
                  GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpresee 281
                           +L+vk+gE++aVn+vlq+hrll +s       +++L l++s++P+++ ++eqea+hn++s+ +r++++l+yy+a+fds+  +lp +s +
  PGSC0003DMP400005473   1 MLHVKEGESVAVNCVLQMHRLLYDSSGGIL--RDFLGLIRSTNPTIILMAEQEAEHNEPSLEARLVNSLRYYAAVFDSIGFSLPLDSPA 87 
                           79*******************966655444..79******************************************************* PP

                  GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpL 367
                           rik+E+  ++r+i+n++aceg++r+erhe ++kWr+ +e+ GF+   ++e++  q ++ll++++ + yrv    +++++l+l W d+pL
  PGSC0003DMP400005473  88 RIKIEEL-FARDIRNIIACEGRDRTERHECFGKWRKLMEQGGFRCTGITERELFQSQMLLKMYSCEDYRVTkqgNDDAALTLSWLDQPL 175
                           *****98.********************************************************888***94445589999******** PP

                  GRAS 368 vsvSaWr 374
                            +vSaW+
  PGSC0003DMP400005473 176 CTVSAWT 182
                           ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098523.5821159IPR005202Transcription factor GRAS
PfamPF035147.0E-561182IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MLHVKEGESV AVNCVLQMHR LLYDSSGGIL RDFLGLIRST NPTIILMAEQ EAEHNEPSLE  60
ARLVNSLRYY AAVFDSIGFS LPLDSPARIK IEELFARDIR NIIACEGRDR TERHECFGKW  120
RKLMEQGGFR CTGITERELF QSQMLLKMYS CEDYRVTKQG NDDAALTLSW LDQPLCTVSA  180
WTPIDAAGSS SSYYQPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-254181197374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005473
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358871.11e-141PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN31e-68SCL28_ARATH; Scarecrow-like protein 28
TrEMBLM0ZTN71e-146M0ZTN7_SOLTU; Uncharacterized protein
TrEMBLM0ZTN81e-139M0ZTN8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000078791e-140(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.15e-71GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]