PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005474
Common NameLOC102579355
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 680aa    MW: 75421.9 Da    PI: 6.0812
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005474genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.12.8e-1302976641374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL++c+ea+ s++ + +++l+arl +lasp+g+p+ Rl+ayfteALa r+ar ++++++++pp++ + +  +++ +al+l+++vsP
  PGSC0003DMP400005474 297 LISLLVSCVEAIGSRNVTGVNQLIARLGQLASPRGSPVSRLTAYFTEALALRVARIWPHIFHIIPPRDLD-RLDDDSSTALRLLNQVSP 384
                           5799****************************************************************98.5678888999******** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           i+kf h+t N+ +l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+    sk+ l etg+rLa+fAe+l++ fef
  PGSC0003DMP400005474 385 IPKFIHFTSNEILLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRPNPPTHVRITGIGE----SKQDLVETGDRLAEFAEALNLAFEF 469
                           ************************************************************....9************************ PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267
                           ++ v++rled++l++L+vk+gE++aVn+vlq+hrll +s       +++L l++s++P+++ ++eqea+hn++s+ +r++++l+yy+a+
  PGSC0003DMP400005474 470 HP-VVDRLEDVRLWMLHVKEGESVAVNCVLQMHRLLYDSSGGIL--RDFLGLIRSTNPTIILMAEQEAEHNEPSLEARLVNSLRYYAAV 555
                           **.7*******************************966655444..79***************************************** PP

                  GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...e 353
                           fds+  +lp +s +rik+E+  ++r+i+n++aceg++r+erhe ++kWr+ +e+ GF+   ++e++  q ++ll++++ + yrv    +
  PGSC0003DMP400005474 556 FDSIGFSLPLDSPARIKIEEL-FARDIRNIIACEGRDRTERHECFGKWRKLMEQGGFRCTGITERELFQSQMLLKMYSCEDYRVTkqgN 643
                           *******************98.********************************************************888***94445 PP

                  GRAS 354 esgslvlgWkdrpLvsvSaWr 374
                           ++++l+l W d+pL +vSaW+
  PGSC0003DMP400005474 644 DDAALTLSWLDQPLCTVSAWT 664
                           589999**************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.139271641IPR005202Transcription factor GRAS
PfamPF035149.6E-128297664IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MLAGCSSSLL SPRHRLRSEA SAQFQACNFP SMSTQRLDLP CSFARKDTSR SQSISRPVGL  60
SVEKPIEAKN STCSLKQNIR LPPSSTSAQT SYVEGRRESK DEFWEKGRSL KRYAEQGCID  120
DESCMSRAKR KKGNRKSGDC SEDGYDLSLS QLGGGDFWLQ SGFNAARSVP LIAGLHPPQA  180
APFSFSCSGE EESVCYVPNE VISPPLPMSN NPWIESVVTE ITSFGDKNVS TSQDLAREAS  240
VSSASLDSHG LVLRPNENPG EHEIGNGSRL PNPNDRGEVV TAHNGHNNHR EDDAAELISL  300
LVSCVEAIGS RNVTGVNQLI ARLGQLASPR GSPVSRLTAY FTEALALRVA RIWPHIFHII  360
PPRDLDRLDD DSSTALRLLN QVSPIPKFIH FTSNEILLRA FEGKDRVHII DFDIKQGLQW  420
PSLFQSLASR PNPPTHVRIT GIGESKQDLV ETGDRLAEFA EALNLAFEFH PVVDRLEDVR  480
LWMLHVKEGE SVAVNCVLQM HRLLYDSSGG ILRDFLGLIR STNPTIILMA EQEAEHNEPS  540
LEARLVNSLR YYAAVFDSIG FSLPLDSPAR IKIEELFARD IRNIIACEGR DRTERHECFG  600
KWRKLMEQGG FRCTGITERE LFQSQMLLKM YSCEDYRVTK QGNDDAALTL SWLDQPLCTV  660
SAWTPIDAAG SSSSYYQPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-7430466526380Protein SCARECROW
5b3h_A2e-7430466525379Protein SCARECROW
5b3h_D2e-7430466525379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005474
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092790.0AP009279.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0197J17, complete sequence.
GenBankAP0102630.0AP010263.1 Solanum lycopersicum DNA, chromosome 8, clone: C08SLm0019C20, complete sequence.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006358871.10.0PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN30.0SCL28_ARATH; Scarecrow-like protein 28
TrEMBLM0ZTN80.0M0ZTN8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000078790.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55682434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.10.0GRAS family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]