PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005591
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family DBB
Protein Properties Length: 138aa    MW: 15242 Da    PI: 7.5303
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005591genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.46.2e-08433534
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                           C+ +e+  ++lfC  ++  lC++C ++ H
  PGSC0003DMP400005591  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                          7**************************998 PP
2zf-B_box279.5e-095291237
              zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                          + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  PGSC0003DMP400005591 52 KIQRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                          6689**************************9996555556 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003361.2E-8147IPR000315B-box-type zinc finger
PfamPF006432.0E-6342IPR000315B-box-type zinc finger
CDDcd000212.26E-5345No hitNo description
SMARTSM003363.2E-95196IPR000315B-box-type zinc finger
PROSITE profilePS501199.2145196IPR000315B-box-type zinc finger
PfamPF006431.8E-65291IPR000315B-box-type zinc finger
CDDcd000211.67E-55584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SKIQRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLIRQR IEVCKFMLRQ ALVQVLVVFR  120
EESILFLLLC PSVVSGG*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005591
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754401e-115HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361997.14e-70PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM54e-62BBX19_ARATH; B-box zinc finger protein 19
TrEMBLM0ZTY64e-94M0ZTY6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000080442e-69(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-64DBB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]