PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005593
Common NameLOC102578169
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family DBB
Protein Properties Length: 213aa    MW: 23536.7 Da    PI: 6.0836
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005593genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.31.3e-07433534
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                           C+ +e+  ++lfC  ++  lC++C ++ H
  PGSC0003DMP400005593  4 LCDVCESAAAILFCAADEAALCRSCDEKVH 33
                          7**************************998 PP
2zf-B_box25.72.4e-085291237
              zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                          + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H
  PGSC0003DMP400005593 52 KIQRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtH 91
                          6689**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.21147IPR000315B-box-type zinc finger
SMARTSM003361.2E-8147IPR000315B-box-type zinc finger
PfamPF006434.4E-6341IPR000315B-box-type zinc finger
CDDcd000215.08E-7345No hitNo description
SMARTSM003363.2E-95196IPR000315B-box-type zinc finger
PROSITE profilePS501199.2145196IPR000315B-box-type zinc finger
PfamPF006434.6E-65285IPR000315B-box-type zinc finger
CDDcd000218.57E-75584No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MRTLCDVCES AAAILFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLADP SKIQRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HGRYLLIRQR IEFPGDKLGP SNELGFPSTE  120
QGDVRREPAL PFKLPMIDNH QPNRETAMAA VENNVNNSVK MENELIDLNS RPHRMHGQTS  180
NNQEQGMDML GGSNHESVGV VPDGPFKREP EK*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005593
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2396501e-111AC239650.4 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-23c6 map 1, complete sequence.
GenBankHG9755131e-111HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006361997.11e-158PREDICTED: B-box zinc finger protein 19-like
SwissprotC0SVM54e-82BBX19_ARATH; B-box zinc finger protein 19
TrEMBLM0ZTY81e-156M0ZTY8_SOLTU; B-box zinc finger protein 21
STRINGPGSC0003DMT4000080441e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31752340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-84DBB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]