PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400005770

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

ARR-B

Protein Properties

Length: 774aa MW: 85312.5 Da PI: 6.7268

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400005770	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	75.4	7.9e-24	211	259	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 +r++W+ eLH++Fv av qL G+ekA+Pk+il+lm+v+gLt+e+v+SHLQ PGSC0003DMP400005770 211 ARVVWSIELHRKFVAAVGQL-GIEKAVPKRILDLMNVDGLTRENVASHLQ 259 79****************.*************************** PP
2	Response_reg	80.7	5e-27	28	136	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 vl vdD+p+ ++ll +l+k +y +v+++++++ al++l+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++a+++ +++ PGSC0003DMP400005770 28 VLAVDDDPICLKLLDGLLRKCQY-QVTTTSQARMALKMLRENRdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDTKLVR 114 799******************.***********999889***************87754.558************ PP HHHHTTESEEEESS--HHHHHH CS Response_reg 88 ealkaGakdflsKpfdpeelvk 109 + ++ Ga d+l+Kp+ +eel++ PGSC0003DMP400005770 115 KGIDHGACDYLVKPVRIEELRN 136 ******************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF52172	6.55E-36	25	152	IPR011006	CheY-like superfamily
Gene3D	G3DSA:3.40.50.2300	4.5E-43	25	160	No hit	No description
SMART	SM00448	8.0E-33	26	138	IPR001789	Signal transduction response regulator, receiver domain
PROSITE profile	PS50110	43.897	27	142	IPR001789	Signal transduction response regulator, receiver domain
Pfam	PF00072	1.9E-24	28	137	IPR001789	Signal transduction response regulator, receiver domain
CDD	cd00156	1.92E-29	29	142	No hit	No description
SuperFamily	SSF46689	4.48E-14	207	260	IPR009057	Homeodomain-like
PROSITE profile	PS51294	9.925	207	266	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-23	207	259	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-20	211	260	IPR006447	Myb domain, plants
SuperFamily	SSF52540	3.74E-15	285	366	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Gene3D	G3DSA:3.40.50.300	2.7E-17	289	377	IPR027417	P-loop containing nucleoside triphosphate hydrolase
CDD	cd00009	1.05E-8	308	366	No hit	No description
Pfam	PF00004	8.2E-11	310	365	IPR003959	ATPase, AAA-type, core

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000160	Biological Process	phosphorelay signal transduction system
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
MTVEEIRGNM GGGERGNNYD NFPIGMRVLA VDDDPICLKL LDGLLRKCQY QVTTTSQARM 60 ALKMLRENRD RFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANSDT KLVRKGIDHG 120 ACDYLVKPVR IEELRNIWQH VIRKKKVEPK SQSKSNDQDK SYQVSGESGR GQSPTGNVDQ 180 NGKCNKKRKD EEDENDENGN DDEDPTTQKR ARVVWSIELH RKFVAAVGQL GIEKAVPKRI 240 LDLMNVDGLT RENVASHLQA LPVGEVGETK SMYKEIVLGG DVWDLLDELM IYMGNPMQYY 300 EKDVKFVRGV LLSGPPGTGK TLFARTLAKE SGMPFVFASG AEFTDSEKSG AARINEMFSV 360 ARRNKYRLYL KRINSVQTQQ ANMVAALGGR DYVRMGSLDG LGDFRTLGGS GRYTHAALSS 420 YSSGGMLGRL NSAAGLSVRN LAASQLLQPS HGQNLSNSVN AFTKLNPNIP PASQNASLFQ 480 GIPASLELDQ LQQSKSSAHI PLDESRLLTA EVLGCSNNSL SNVPNIPMLL QGNPQQPLTG 540 GGFGNQHSQN MTPFSSDSFN TGVNGSSNFL EHGRCNENWQ NSIQLSKFQS NSFPLTESFI 600 NSHLPQNSVR EATTHLQNSP LDFTSTTSVS PPFEDSRGEI QYRQSMAGAV QSMNQTPSQA 660 WADNKQHYSH NSNNTFGNNL RSQVPNDGNM ASLSHSMNQS NENFGRRMDM SLIGRSSGGS 720 STLVQQTEHE KLTLDSRTRS NEDYLLEPTK QQVGFSPQGY DSLDDLMTAM KRV*

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

MTVEEIRGNM GGGERGNNYD NFPIGMRVLA VDDDPICLKL LDGLLRKCQY QVTTTSQARM  60
ALKMLRENRD RFDLVISDVH MPDMDGFKLL ELVGLEMDLP VIMLSANSDT KLVRKGIDHG  120
ACDYLVKPVR IEELRNIWQH VIRKKKVEPK SQSKSNDQDK SYQVSGESGR GQSPTGNVDQ  180
NGKCNKKRKD EEDENDENGN DDEDPTTQKR ARVVWSIELH RKFVAAVGQL GIEKAVPKRI  240
LDLMNVDGLT RENVASHLQA LPVGEVGETK SMYKEIVLGG DVWDLLDELM IYMGNPMQYY  300
EKDVKFVRGV LLSGPPGTGK TLFARTLAKE SGMPFVFASG AEFTDSEKSG AARINEMFSV  360
ARRNKYRLYL KRINSVQTQQ ANMVAALGGR DYVRMGSLDG LGDFRTLGGS GRYTHAALSS  420
YSSGGMLGRL NSAAGLSVRN LAASQLLQPS HGQNLSNSVN AFTKLNPNIP PASQNASLFQ  480
GIPASLELDQ LQQSKSSAHI PLDESRLLTA EVLGCSNNSL SNVPNIPMLL QGNPQQPLTG  540
GGFGNQHSQN MTPFSSDSFN TGVNGSSNFL EHGRCNENWQ NSIQLSKFQS NSFPLTESFI  600
NSHLPQNSVR EATTHLQNSP LDFTSTTSVS PPFEDSRGEI QYRQSMAGAV QSMNQTPSQA  660
WADNKQHYSH NSNNTFGNNL RSQVPNDGNM ASLSHSMNQS NENFGRRMDM SLIGRSSGGS  720
STLVQQTEHE KLTLDSRTRS NEDYLLEPTK QQVGFSPQGY DSLDDLMTAM KRV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1irz_A	9e-21	206	264	1	59	ARR10-B
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.
UniProt	Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250\|UniProtKB:Q940D0}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400005770

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975446	0.0	HG975446.1 Solanum pennellii chromosome ch07, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006343681.1	0.0	PREDICTED: two-component response regulator ORR24-like
Swissprot	A2X1N2	1e-105	ORR24_ORYSI; Two-component response regulator ORR24
Swissprot	B8AEH1	1e-105	ORR23_ORYSI; Two-component response regulator ORR23
Swissprot	Q6H805	1e-105	ORR24_ORYSJ; Two-component response regulator ORR24
Swissprot	Q6K8X6	1e-105	ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBL	M0ZUD0	0.0	M0ZUD0_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400008290	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2258	24	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G25180.1	1e-93	response regulator 12

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400005770

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]