PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005823
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 199aa    MW: 22044 Da    PI: 9.1036
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005823genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH345.4e-111231631055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r+RR++iN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  PGSC0003DMP400005823 123 RKRREKINQRLRILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 163
                           9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-14112179IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.281113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-12116172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-11119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.65E-10122167No hitNo description
PfamPF000102.7E-8123163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVEGENTSSP SQVLANYNPI EVDDFLNQDV SNDSMESGEN KAKVLDSPPE SSKRKRSCNL  60
LGDVPKNKRS VKLKKTSKMD GENKAALQRQ NSISCCSEDE SINVPKSRAS RGSATDSQSL  120
YARKRREKIN QRLRILQSLV PNGTKVDIST MLEEAVQYVK FLQLQIKLLS SDDLWMYAPI  180
AYNGMDIGLD LKIGTPKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005823
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754497e-74HG975449.1 Solanum pennellii chromosome ch10, complete genome.
GenBankHG9755227e-74HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015055483.11e-131transcription factor bHLH84-like
SwissprotQ7XHI93e-54BH084_ARATH; Transcription factor bHLH84
TrEMBLM0ZUH11e-142M0ZUH1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000083701e-142(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA63922101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-56bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]