PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400005913
Common NameLOC102591894
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NF-YC
Protein Properties Length: 277aa    MW: 30810.3 Da    PI: 5.1759
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400005913genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC58.21.8e-186861898
                 NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                          ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  +     +t++   ++ +v++ ++fdfl ++v +
  PGSC0003DMP400005913  6 DTRFPAARIKKIMQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLRRGAKTVNSLHLKHCVQSYNVFDFLREVVSK 86
                          5789************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-26372IPR009072Histone-fold
SuperFamilySSF471132.37E-204100IPR009072Histone-fold
PfamPF008081.7E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIAMA VPVLVSKALE LFLQDLCDRT YDITLRRGAK  60
TVNSLHLKHC VQSYNVFDFL REVVSKVPDY GHSDAAGEMP KRRKVAIEEH HDSEDEYKKS  120
RTEMSPVSSS GRGRGRGRGR GRGRVSRADK ELARPDMQLE SCTSAQQSGQ QNPNPGTQTE  180
NCSEPKESPK QDSTVGDKEN SVVTTPNLKV DVDDSTDKPA APEIAPCNPS PRPVNEKAEE  240
GPQWSLEMDR MVIDPAHMSQ LNTSVAEEEE DYDEEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A7e-22272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133142RGRGRGRGRG
2133143RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400005913
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0141430.0BT014143.1 Lycopersicon esculentum clone 133262F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347683.10.0PREDICTED: dr1-associated corepressor-like
TrEMBLM0ZUP50.0M0ZUP5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000085180.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA79602230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.13e-67nuclear factor Y, subunit C11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]