PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400006077

Common Name

LOC102578710

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

SRS

Protein Properties

Length: 187aa MW: 21300 Da PI: 8.4052

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400006077	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	165.7	2.6e-51	14	145	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 s++++C+dCGnqakkdC + RCRtCCk++g++C+thvkstW+p++ rr r++++ ++ ++ ++kr+re+ al +t PGSC0003DMP400006077 14 SNNKRCEDCGNQAKKDCLYFRCRTCCKTQGYQCQTHVKSTWIPVSTRRPRHHHQISTV-------QQPNPKRHREN-----HALLQTG- 89 56789******************************************976665543.......44466777764.....3333333. PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 e e ++lP+evs +a+frcvrvssvd+ +++aYqt+v+i+GhvfkGiLydqG + PGSC0003DMP400006077 90 ------GEEEEEELPSEVSLPAIFRCVRVSSVDNVVDQYAYQTSVKIAGHVFKGILYDQGNN 145 ......2345678*********************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.2E-53	17	145	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.6E-25	19	60	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.4E-25	97	143	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MMMREDEGIV ISSSNNKRCE DCGNQAKKDC LYFRCRTCCK TQGYQCQTHV KSTWIPVSTR 60 RPRHHHQIST VQQPNPKRHR ENHALLQTGG EEEEEELPSE VSLPAIFRCV RVSSVDNVVD 120 QYAYQTSVKI AGHVFKGILY DQGNNNMPNQ TSSRGFHHQQ QLANFTPPIS PTFMPGMQLF 180 QYPKSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400006077

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975449	1e-108	HG975449.1 Solanum pennellii chromosome ch10, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006360632.1	1e-140	PREDICTED: protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9LQZ5	2e-43	SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBL	M0ZV22	1e-139	M0ZV22_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400008767	1e-140	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4156	24	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66350.1	5e-45	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400006077
Entrez Gene	102578710

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]