PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006318
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MIKC_MADS
Protein Properties Length: 204aa    MW: 23388.4 Da    PI: 8.5871
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006318genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.18.4e-27959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          k+ien++nrqvt+skRrngi+KKA+EL vLCda++++i++sst k +ey s
  PGSC0003DMP400006318  9 KKIENSTNRQVTYSKRRNGIFKKAKELTVLCDAKISLIMLSSTRKYHEYTS 59
                          68***********************************************75 PP
2K-box55.91.8e-19811463398
                 K-box  33 reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                           +++  + Ged++ L+l+eL +L++++ +s+ +iR++K++++++q+++ +kk ++l+e++ +L   l
  PGSC0003DMP400006318  81 STHYERTGEDMSGLNLQELCHLQENITESVAEIRERKYHVIKNQTDTCRKKVRNLEEQHGNLVLDL 146
                           6778899****************************************************9997665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.581161IPR002100Transcription factor, MADS-box
SMARTSM004326.5E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-34288IPR002100Transcription factor, MADS-box
CDDcd002653.90E-38280No hitNo description
PRINTSPR004046.3E-26323IPR002100Transcription factor, MADS-box
PfamPF003198.3E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004046.3E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.87854152IPR002487Transcription factor, K-box
PfamPF014861.4E-1483143IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRGKIEIKK IENSTNRQVT YSKRRNGIFK KAKELTVLCD AKISLIMLSS TRKYHEYTSP  60
NTTTKKMIDQ YQSALGVDIW STHYERTGED MSGLNLQELC HLQENITESV AEIRERKYHV  120
IKNQTDTCRK KVRNLEEQHG NLVLDLEAKC EDPKYGVVEN EGHYNSAVAF ANGVHNLYAF  180
RLQPLHPNLQ NEEGFGSRDL RLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-15161161MEF2C
5f28_B8e-15161161MEF2C
5f28_C8e-15161161MEF2C
5f28_D8e-15161161MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006318
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755164e-66HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006340689.11e-147PREDICTED: floral homeotic protein DEFICIENS-like
SwissprotQ003J21e-101TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLM0ZVL51e-150M0ZVL5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000091121e-146(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-61MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]