PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400006342

Common Name

BBR/BPC2

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

BBR-BPC

Protein Properties

Length: 286aa MW: 31733.6 Da PI: 8.4574

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400006342	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	289.4	1.5e-88	1	285	32	301
GAGA_bind 32 iaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla....salpvgvqvlsgtksidslqqlse 116 +aerda+irern+al e+k a+aerdma lqrd+alaern+ + er+++++al l++ s++ +++g ++ sg+k+i + qq+ + PGSC0003DMP400006342 1 MAERDAAIRERNMALEERKRAFAERDMAMLQRDAALAERNALIQERNDAIAALRLQDSSTNdnnmVPDSPGNGTESGAKHIYNQQQMYR 89 78************************************************9998887776654344566777777787776666433 PP GAGA_bind 117 .......pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkak...kkkkksekskkkvkkesader.....skae 190 +ed++++ + +++ +i ++++ ke++++k+ + +++ k + + ++ ++++++ + ++ + + + ++ PGSC0003DMP400006342 90 ttaeaahGSMEDPSAGYLKDTDTSEAKIPKKVKRPKESRHNKQAKIPRVGKIGTDNlsmQVIATTSDDWANLQEMDS--DkegdtQLTS 176 34555556777777776666666777777777777777666666666666655554333333333444433333222..1233324445 PP GAGA_bind 191 kksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279 +k+ +l+ ++++Des++PvPvCsCtG+++ CYkWG GGWqSaCCtttiS+yPLP+ +++r +R++grKmS+gaf+klL++Laa+Gydl PGSC0003DMP400006342 177 WKD-NLGF-QINFDESAMPVPVCSCTGTPQPCYKWGHGGWQSACCTTTISMYPLPQISNKRYSRVGGRKMSGGAFSKLLNRLAAQGYDL 263 543.5555.688************************************************************************* PP GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301 s p+DLkdhWAkHGtn++ t++ PGSC0003DMP400006342 264 SIPLDLKDHWAKHGTNRYSTLK 285 ****************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.6E-87	1	285	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.8E-78	1	285	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MAERDAAIRE RNMALEERKR AFAERDMAML QRDAALAERN ALIQERNDAI AALRLQDSST 60 NDNNMVPDSP GNGTESGAKH IYNQQQMYRT TAEAAHGSME DPSAGYLKDT DTSEAKIPKK 120 VKRPKESRHN KQAKIPRVGK IGTDNLSMQV IATTSDDWAN LQEMDSDKEG DTQLTSWKDN 180 LGFQINFDES AMPVPVCSCT GTPQPCYKWG HGGWQSACCT TTISMYPLPQ ISNKRYSRVG 240 GRKMSGGAFS KLLNRLAAQG YDLSIPLDLK DHWAKHGTNR YSTLK*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400006342

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	0.0	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001275213.1	0.0	barley B recombinant-like protein D-like
Refseq	XP_015159803.1	0.0	PREDICTED: barley B recombinant-like protein D-like isoform X1
TrEMBL	H1ZN96	0.0	H1ZN96_SOLTU; GAGA-binding transcriptional activator
STRING	PGSC0003DMT400009137	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8062	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.2	4e-77	basic pentacysteine 6

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400006342
Entrez Gene	102584222