PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400006480

Common Name

LOC102606359

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

DBB

Protein Properties

Length: 183aa MW: 20104.9 Da PI: 7.6779

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400006480	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	23.5	1.1e-07	4	33	5	34
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeH 34 C+ +e+ ++lfC ++ lC+ C ++ H PGSC0003DMP400006480 4 LCDVCESAAAILFCAADEAALCRACDEKVH 33 7**************************998 PP
2	zf-B_box	29.5	1.5e-09	52	92	2	38
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38 e ++C+ +e+ ++ ++Ce +++ lC +C + H g H+ PGSC0003DMP400006480 52 EVPRCDICESSPAFFYCEVDGSSLCLQCDMMVHVGgkrtHS 92 789***************************99966566675 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	1.5E-8	1	47	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.153	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	3.7E-6	3	42	IPR000315	B-box-type zinc finger
CDD	cd00021	9.35E-7	3	45	No hit	No description
PROSITE profile	PS50119	9.357	51	96	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.9E-7	51	91	IPR000315	B-box-type zinc finger
SMART	SM00336	2.1E-10	51	96	IPR000315	B-box-type zinc finger
CDD	cd00021	5.25E-7	54	93	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MRTLCDVCES AAAILFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLAKP NEVPRCDICE 60 SSPAFFYCEV DGSSLCLQCD MMVHVGGKRT HSRYLLLRQK VEFPGDKSGP TEELARKTLD 120 PGENKRDHSH SPKPMVKDNQ QNHRGSPILI SDGSADGNGK KDKMIDLNVK PNRFHGHASN 180 QD*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269\|PubMed:18540109}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400006480

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975441	1e-37	HG975441.1 Solanum pennellii chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006340704.1	1e-134	PREDICTED: B-box zinc finger protein 19-like
Swissprot	C0SVM5	2e-72	BBX19_ARATH; B-box zinc finger protein 19
TrEMBL	M0ZW20	1e-132	M0ZW20_SOLTU; B-box zinc finger protein 23
STRING	PGSC0003DMT400009328	1e-133	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3175	23	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38960.1	7e-75	DBB family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400006480
Entrez Gene	102606359

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]