PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006633
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family BBR-BPC
Protein Properties Length: 321aa    MW: 35925.3 Da    PI: 10.3119
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006633genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind375.97.1e-1152232018301
             GAGA_bind  18 aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasalpvgvqvlsgtk 106
                           +s+k     q+m+++aerda+i+ernlalsekkaa+aerdma lqrd+a+aern+a++erdn++++l+++en+      +g q+++g+k
  PGSC0003DMP400006633  22 PSMK-----QIMAIMAERDAAIQERNLALSEKKAALAERDMAILQRDSAIAERNNAIMERDNAIATLQYRENA-----MTGGQIVRGVK 100
                           4555.....**************************************************************98.....45788****** PP

             GAGA_bind 107 sidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader....... 186
                           ++++ qq +++ p++++++++ re++++ea p++  a+e  + +++k   rak+pk+ + +kk+ k     kkvk+e++d +       
  PGSC0003DMP400006633 101 HMHHPQQhVHHqPHMGEPTYNPREMHMVEAIPVSPPAPEPAKPRRNK---RAKEPKAVTGSKKTPKA---SKKVKRETEDLNqttygks 183
                           ******9644469*******************999887766666555...55555544443333322...2223333322111345566 PP

             GAGA_bind 187 ......................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrga 253
                                                 sk ++k++dl+ln+v++De+t+PvPvCsCtG+lr CYkWGnGGWqS+CCtt++S+yPLP+++++r+a
  PGSC0003DMP400006633 184 pewkgaqemvgasddlnrqlavSKPDWKDQDLGLNQVAFDETTMPVPVCSCTGVLRPCYKWGNGGWQSSCCTTNLSMYPLPAVPNKRHA 272
                           789999*********************************************************************************** PP

             GAGA_bind 254 RiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                           Ri+grKmS++af+klL++LaaeG+dlsnpvDLk+ WAkHGtn+++ti+
  PGSC0003DMP400006633 273 RIGGRKMSGSAFTKLLSRLAAEGHDLSNPVDLKNNWAKHGTNRYITIK 320
                           ***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012262.7E-1493320IPR010409GAGA-binding transcriptional activator
PfamPF062175.0E-10410320IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0005730Cellular Componentnucleolus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MSMLRVKSAK FSMYQWLMQH QPSMKQIMAI MAERDAAIQE RNLALSEKKA ALAERDMAIL  60
QRDSAIAERN NAIMERDNAI ATLQYRENAM TGGQIVRGVK HMHHPQQHVH HQPHMGEPTY  120
NPREMHMVEA IPVSPPAPEP AKPRRNKRAK EPKAVTGSKK TPKASKKVKR ETEDLNQTTY  180
GKSPEWKGAQ EMVGASDDLN RQLAVSKPDW KDQDLGLNQV AFDETTMPVP VCSCTGVLRP  240
CYKWGNGGWQ SSCCTTNLSM YPLPAVPNKR HARIGGRKMS GSAFTKLLSR LAAEGHDLSN  300
PVDLKNNWAK HGTNRYITIK *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00540DAPTransfer from AT5G42520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006633
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ9823140.0FJ982314.1 Solanum tuberosum GAGA-binding transcriptional activator (BBR/BPC3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001275364.10.0protein BASIC PENTACYSTEINE6-like
RefseqXP_006342016.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_006342018.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
RefseqXP_015161877.10.0PREDICTED: protein BASIC PENTACYSTEINE6-like isoform X1
SwissprotQ8L9991e-133BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLM0ZWF80.0M0ZWF8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000095340.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.11e-110basic pentacysteine 6
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]