PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006634
Common NameLOC102588100
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 445aa    MW: 48291.2 Da    PI: 8.6883
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006634genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.9e-10299350556
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                           kr++r   NR++A rs +RK  +i eLe kv++L++e ++L  ++  l+k+ 
  PGSC0003DMP400006634 299 KRAKRILANRLSAARSKERKTRYISELEHKVQKLQTETTTLSTQVTILQKNF 350
                           9*****************************************9998888865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-13295359IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.875297360IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.53E-11299353No hitNo description
PfamPF001702.5E-9299350IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-11299351No hitNo description
CDDcd147036.85E-20300349No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MAQSNSKPPM SGHNFGVGAA SHVRSLSQSS IFSNSCLPPL SPFPPSEPGM VSGHSSLKDI  60
SMEEVDVNSQ GLGVVSSFTR DGLPPRKGHR RSNSDVPLGF SAMIQSSPLL MPISGQKIFG  120
RAVSLGDSNG KIDERKPKGE VTDELLFSYM NLENIETLNG SGTEDRDKDS IVSGTKLSGC  180
ESSNNEAESV MKGNTVSIQP TSLREGTKRS ADANIAPAAR HFRSLSMDSA IGNFHYGDES  240
PNLPTSLVMR SGQLSPSNSG NESSSKHNLD FGNAEFSEAE MKKIMADERL AEIAVLDPKR  300
AKRILANRLS AARSKERKTR YISELEHKVQ KLQTETTTLS TQVTILQKNF VEISSLNSEL  360
KFRIQAMEQQ AQLRDALHEA LTAEVQRLKL AAGEHREEGR LPNNMTQQTP VKHNMFQMQR  420
QQPSQMQQLS VGKTPAASAT PASA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006634
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0128330.0BT012833.1 Lycopersicon esculentum clone 113887F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342019.10.0PREDICTED: probable transcription factor PosF21 isoform X2
TrEMBLM0ZWF90.0M0ZWF9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000095380.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12652478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.33e-74bZIP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]