PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006687
Common NameLOC102601100
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 148aa    MW: 15970.3 Da    PI: 10.3397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006687genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.91.2e-0538761255
                          HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                          R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  PGSC0003DMP400006687 38 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 76
                          7788999*********998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.282675IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-63680No hitNo description
SuperFamilySSF474591.3E-113688IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.2E-104083IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MPEAKRTSNT LETNKGPQNA PKKSRVDSRA SCPPFKVRKE KLGDRIAALQ QLVAPFGKTD  60
TASVLMEAIG YIKFLQNQVE TLSVPYMKSS RSKASRSLHG GGGEMNNEEM KRDLRSRGLC  120
LVPLTCLTYV TEGGGGVWPP PNFTGGT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006687
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755167e-67HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341970.11e-105PREDICTED: transcription factor bHLH110
RefseqXP_015071751.11e-105transcription factor bHLH110 isoform X2
SwissprotQ9SFZ37e-55BH110_ARATH; Transcription factor bHLH110
TrEMBLA0A3Q7GA481e-105A0A3Q7GA48_SOLLC; Uncharacterized protein
TrEMBLM0ZWL11e-105M0ZWL1_SOLTU; Uncharacterized protein
TrEMBLM0ZWL21e-104M0ZWL2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000096031e-105(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.14e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]