PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006697
Common NameLOC102604014
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family TALE
Protein Properties Length: 339aa    MW: 38355.1 Da    PI: 7.6865
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006697genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.18.2e-10971341954
                           HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
              Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           Fe   ++yp+ +e+  LA+++gLt +qV +WF N R +
  PGSC0003DMP400006697  97 FEHflHPYPKDSEKIMLARQTGLTRSQVANWFINARVR 134
                           664459******************************88 PP
2BELL52.31.4e-171343972
                  BELL 39 avaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                          +vaglg+akpYtslAlk+iSr+FrcL+dai++qi
  PGSC0003DMP400006697  1 MVAGLGAAKPYTSLALKTISRQFRCLRDAIKKQI 34
                          69*******************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075261.5E-11130IPR006563POX domain
PROSITE profilePS5007112.34175138IPR001356Homeobox domain
SMARTSM003894.4E-1078142IPR001356Homeobox domain
CDDcd000861.13E-1278139No hitNo description
SuperFamilySSF466898.98E-1879145IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-2881144IPR009057Homeodomain-like
PfamPF059209.2E-1895134IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MVAGLGAAKP YTSLALKTIS RQFRCLRDAI KKQIQVTRRS LGEQGDSQGE RLYRLRYVDQ  60
QLRQQRSLQQ FGMMRQPWRP QRGLPETAVS VLRAWLFEHF LHPYPKDSEK IMLARQTGLT  120
RSQVANWFIN ARVRLWKPMI EDMYKEEFGV AEAGSGVSPE RVPVDSKEKS IAENTGEEIP  180
ESFTTPAANC SHLDPSDESR NNVTNVHNNS FTTKFSFQDG VYEHERIDCG SSKLQSEQIP  240
IAHGFGPKPT SDGSIIGAVN TYHPSMFGDI MGNQVSLALR LQNSQMDQQP MSGRPQLRQD  300
EKTDSTHMDI GKGEYYYIDP VNQQERFSGP HLLSDFVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A1e-1684141562Homeobox protein Meis2
3k2a_B1e-1684141562Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006697
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341980.10.0PREDICTED: BEL1-like homeodomain protein 3
RefseqXP_015161897.10.0PREDICTED: BEL1-like homeodomain protein 3
TrEMBLM0ZWL90.0M0ZWL9_SOLTU; Uncharacterized protein
TrEMBLM0ZWM10.0M0ZWM1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000096100.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.21e-73BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]