PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006748
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family E2F/DP
Protein Properties Length: 306aa    MW: 34017.5 Da    PI: 8.6377
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006748genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP79.43.3e-25140205171
               E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                           r+++sL+llt+kf+ ll+++++g+++ln+ a+ L   +v   +RRiYDi+NVLe+++liek+ k++irwkg
  PGSC0003DMP400006748 140 RYDNSLGLLTKKFIGLLQEADDGTLDLNHSAEVL---EV--AKRRIYDITNVLEGIGLIEKTTKSRIRWKG 205
                           689*******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.35E-16140203IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.1E-25140206IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.5E-30140205IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.7E-23142205IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440742.07E-7217273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MSTTAGENVD LNLSLATPLH LRSSSSPSAI AVTASSPYRS HPRFLSNLCS ESLSVVPGNP  60
RPSATFGFAP KNEIEKSEEY NCGYGVSQRS PASNYSPLEQ APSAHTKQPS KRKSSRDTIE  120
ATKGINADLH DNLNLGVTYR YDNSLGLLTK KFIGLLQEAD DGTLDLNHSA EVLEVAKRRI  180
YDITNVLEGI GLIEKTTKSR IRWKGFRSTK SQGLDNQVST LKGEIGYLSA EDRRLDCCIR  240
EKLEQIRTLE SDVNCQKRLF LTEEDIRRLP HFRVCNTHLT YVIRDAVSVL YNVCGVYHRI  300
KLSLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A4e-23136206374PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006748
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006342039.20.0PREDICTED: transcription factor E2FC
TrEMBLM0ZWS00.0M0ZWS0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000096820.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.15e-52E2F/DP family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]