PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400006960
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family NAC
Protein Properties Length: 211aa    MW: 24491.1 Da    PI: 10.2425
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400006960genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.87.2e-0971378128
                   NAM   8 hPtdeelvveyLkkkvegkkleleevikev.d...iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                           hP d+e+++  L k   gk+++ ++++ +v d   i  + P+++ +++k++++++   ++ +++++ +  +++  + g+Wk+t k k++
  PGSC0003DMP400006960   7 HPMDKEMMNS-LVKYGIGKPFPRKHTVMDVdDvygIRVFSPSQILESTKGTNNNTRLLITFQNTENCKVFASK-EAPGFWKSTPKRKSI 93 
                           8******966.66666677755555444442422266789***975555544444333333333333334444.356************ PP

                   NAM  93 lskkgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                           ++++++++g  k+  +y        ++++++ ++++W + ey l
  PGSC0003DMP400006960  94 FDANKRHIGNIKISWYYyynvddgrDKSSSRLRQSEWQIREYYL 137
                           ***9999999888777768888554445556679********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100510.811160IPR003441NAC domain
SuperFamilySSF1019412.48E-97154IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MGKSNSHPMD KEMMNSLVKY GIGKPFPRKH TVMDVDDVYG IRVFSPSQIL ESTKGTNNNT  60
RLLITFQNTE NCKVFASKEA PGFWKSTPKR KSIFDANKRH IGNIKISWYY YYNVDDGRDK  120
SSSRLRQSEW QIREYYLTSK YLPQSKVERK NVLLTMMIKT KAANNNNNDK SDEKMQRIVL  180
DKQDIMQSLQ LPSTLVIEQQ IRASLRFCLC *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400006960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027774642.11e-117uncharacterized protein LOC114078274
TrEMBLM0ZX941e-156M0ZX94_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000099851e-157(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14078510
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]