PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007179
Common NameLOC102580229
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 200aa    MW: 22773.4 Da    PI: 4.7134
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007179genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.8e-1881130356
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                           ++GVr+++ +g+W+AeIrdp     +  ++ +lg+f tae+Aa+a+++ + +++ge
  PGSC0003DMP400007179  81 FRGVRQRP-WGKWAAEIRDP-----HkaQQLWLGTFVTAEDAARAYDKKAIEFRGE 130
                           8*******.**********7.....337*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.98580137IPR001471AP2/ERF domain
SMARTSM003802.0E-3580143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-3080137IPR001471AP2/ERF domain
PfamPF008477.8E-1181130IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-2181138IPR016177DNA-binding domain
PRINTSPR003673.4E-108192IPR001471AP2/ERF domain
CDDcd000186.33E-3081139No hitNo description
PRINTSPR003673.4E-10103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MTILCQENEC YTLAHKLTQD QENYYMVSAL RHVVSGTGDG RVNDEAAQLL LEVQNASSGR  60
SNIDVELERG KKRRRNTKKE FRGVRQRPWG KWAAEIRDPH KAQQLWLGTF VTAEDAARAY  120
DKKAIEFRGE KAITNFPITE YADEINKSPT VVMEELIQVI NGVEVAVNGE NSMQNGDEDD  180
DFWETLEDDG LVKRINMFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-2279138464ATERF1
3gcc_A8e-2279138464ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007179
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-120HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015168992.11e-148PREDICTED: ethylene-responsive transcription factor RAP2-6-like
TrEMBLM0ZXU01e-147M0ZXU0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000102971e-148(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.15e-30ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]