PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007209
Common NameLOC102579254
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 225aa    MW: 24958.7 Da    PI: 9.9602
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007209genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08127167954
                           HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            r RR+ri +++  L++l+P       +K++ a++L +Av+Y+k L
  PGSC0003DMP400007209 127 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAVHYVKFL 167
                           699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.345118167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-14119178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-14122180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-13124173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-6128167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.96E-6141172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010500Biological Processtransmitting tissue development
GO:0048462Biological Processcarpel formation
GO:0080126Biological Processovary septum development
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MELQNIAHSL ELGFSNSNIE MIPLQPPLHN SNYLMTSPPS NFSFMGNPIE EPAAMPILSS  60
IDEIIASAAH GSGNDYSCLQ RRNSMEAMRE MIFRIAMMQP IHIDPESVKP PKRKNVKISK  120
DPQSVAARHR RERISERIRI LQRLVPGGTK MDTASMLDEA VHYVKFLKKQ LQSLEQAAVN  180
NRPMISGFST AMSSPGPMNY NSSSIRACQP HPSMNSSAQN AKLK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007209
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006339941.11e-164PREDICTED: transcription factor HEC1
TrEMBLM0ZXV91e-162M0ZXV9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000103441e-163(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA75223101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.15e-44bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]