PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007304
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 170aa    MW: 19509.4 Da    PI: 4.6622
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007304genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.5e-135395754
                          HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                   HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                            Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI +L
  PGSC0003DMP400007304 53 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIEEL 95
                          57*********************66......***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-1745110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2284695IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.74E-1149100No hitNo description
SMARTSM003533.3E-1452101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1652111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-115395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDNIGDEYKN YWETTMFLQS EELDSYFDEP ISSYYDSSSP DGSQSSMASK NIVSERNRRK  60
KLNERLFALR AVVPNISKMD KASIIKDAID YIEELHKQER RIRGEISELE SGRSSKKNST  120
DLEFEQDESF DSKPKRSRRF EMQYGYDSSG STTRSPPSSS PVDVLEVIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-145195953Transcription factor MYC2
5gnj_B3e-145195953Transcription factor MYC2
5gnj_E3e-145195953Transcription factor MYC2
5gnj_F3e-145195953Transcription factor MYC2
5gnj_G3e-145195953Transcription factor MYC2
5gnj_I3e-145195953Transcription factor MYC2
5gnj_M3e-145195953Transcription factor MYC2
5gnj_N3e-145195953Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007304
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2536451e-130AC253645.3 Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-51e1 map 7, complete sequence.
GenBankHG9754461e-130HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755191e-130HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006344525.11e-117PREDICTED: transcription factor bHLH35
SwissprotQ700E34e-42BH027_ARATH; Transcription factor bHLH27
TrEMBLM0ZY391e-118M0ZY39_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000104631e-117(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29930.22e-35bHLH family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]