PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400007398

Common Name

LOC102594498

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

LBD

Protein Properties

Length: 174aa MW: 19573.2 Da PI: 5.9918

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400007398	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.3	2.3e-42	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l+++pe++r da++s+vyeA+ar+rdPvyG++++i +lq+q+++ PGSC0003DMP400007398 13 PCAACKILRRRCVEKCVLAPYFPPTHPLKFTIAHRVFGASNIIKMLQEVPEDQRADAVNSMVYEANARIRDPVYGCTAIICQLQKQISE 101 7************************************************************************************** PP DUF260 90 lkaelallkee 100 l+a+l++++ e PGSC0003DMP400007398 102 LQADLVKAQVE 112 ***999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.567	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.5E-43	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 174 aa Download sequence Send to blast
MEDKSEYSCP HHPCAACKIL RRRCVEKCVL APYFPPTHPL KFTIAHRVFG ASNIIKMLQE 60 VPEDQRADAV NSMVYEANAR IRDPVYGCTA IICQLQKQIS ELQADLVKAQ VEIMNVQTQN 120 TNLVALICTE MTQNQENNNS TTTESPDHQQ AYGNSNTSLE DNNVYAPWKS LWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-40	13	115	11	113	LOB family transfactor Ramosa2.1
5ly0_B	8e-40	13	115	11	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400007398

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-114	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006340510.1	1e-129	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	4e-66	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	M0ZYB1	1e-127	M0ZYB1_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400010597	1e-128	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-64	LOB domain-containing protein 1

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400007398
Entrez Gene	102594498

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474]