PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007575
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family ERF
Protein Properties Length: 208aa    MW: 23421.1 Da    PI: 5.1847
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007575genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.5e-184596156
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                          + ++GVr +  + +Wv+eIr+p++   +k+++lg++ tae+Aa+a++ a+++l+ge
  PGSC0003DMP400007575 45 PVFRGVRKRN-NDKWVCEIREPTK---QKQIWLGTYPTAEMAARAHDVAALALKGE 96
                          579****888.8*********964...5*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.0E-124596IPR001471AP2/ERF domain
PROSITE profilePS5103220.74546103IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2046105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-2846105IPR001471AP2/ERF domain
SMARTSM003803.3E-2746109IPR001471AP2/ERF domain
PRINTSPR003671.4E-64758IPR001471AP2/ERF domain
CDDcd000182.47E-2847105No hitNo description
PRINTSPR003671.4E-66985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MNDSSNSCSS NRTERSDEEN ILLVSSNKPK KRAAGRKKFK ETRHPVFRGV RKRNNDKWVC  60
EIREPTKQKQ IWLGTYPTAE MAARAHDVAA LALKGELATL NFADSAWRLP VPVSKDPKEL  120
RQAAARAAEA FEPVRDVAPQ ENNNVVVDCN MVVDENDNSN SCGIEEWVAN MEEESLFSPN  180
PCLFGSHFNW DDHVESDVEV SLWNYTI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates cold or dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007575
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015159272.11e-153PREDICTED: dehydration-responsive element-binding protein 1E-like
SwissprotQ9SGJ68e-56DRE1E_ARATH; Dehydration-responsive element-binding protein 1E
TrEMBLM0ZYP11e-151M0ZYP1_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000108761e-152(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26324183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12610.11e-43ERF family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]