PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400007968
Common NameLOC102583067
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 210aa    MW: 24555.7 Da    PI: 6.801
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400007968genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.7e-2052104456
                           -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           ++++++eq++ Le+ F  ++++  e++ +LA++lgL+ rqV+vWFqNrRa++k
  PGSC0003DMP400007968  52 KRKLSDEQVNLLEQSFGHEHKLESERKDKLASELGLDPRQVTVWFQNRRARWK 104
                           45899***********************************************9 PP
2HD-ZIP_I/II117.57.6e-3851141292
           HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                           +kr+ls+eqv+lLE+sF +e+kLe+erK +la+eLgl+prqv vWFqnrRAR+k+k+lE++y++Lk+++++   +++rLe+ev +L+e+
  PGSC0003DMP400007968  51 RKRKLSDEQVNLLEQSFGHEHKLESERKDKLASELGLDPRQVTVWFQNRRARWKSKKLEEEYSKLKNEHETNIVDKCRLENEVLKLKEQ 139
                           8**************************************************************************************99 PP

           HD-ZIP_I/II  91 lk 92 
                           + 
  PGSC0003DMP400007968 140 MC 141
                           86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.81146106IPR001356Homeobox domain
SMARTSM003894.0E-2049110IPR001356Homeobox domain
SuperFamilySSF466894.01E-1852115IPR009057Homeodomain-like
PfamPF000466.0E-1752104IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-2053113IPR009057Homeodomain-like
CDDcd000861.69E-1655107No hitNo description
PRINTSPR000319.3E-67786IPR000047Helix-turn-helix motif
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PRINTSPR000319.3E-686102IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MNNDDQMLHI SQYYSGIYTQ QLTQQGEGKP KRRRKKNKGD DVNGAMMMMM RKRKLSDEQV  60
NLLEQSFGHE HKLESERKDK LASELGLDPR QVTVWFQNRR ARWKSKKLEE EYSKLKNEHE  120
TNIVDKCRLE NEVLKLKEQM CEAEKEIQRL LTERSDGVSI NSPTTSSLSM EAAMDPPFLG  180
EFGFDNSFYG PSHEGLEWVN NLYNMPYHM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12936PKRRRKKN
23353RKKNKGDDVNGAMMMMMRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400007968
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754411e-129HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006346933.11e-156PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotQ9ZU706e-69ATB21_ARATH; Homeobox-leucine zipper protein ATHB-21
TrEMBLM0ZZL21e-155M0ZZL2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000114641e-156(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12892480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18550.13e-56homeobox protein 21
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]