PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008157
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 187aa    MW: 21906.6 Da    PI: 5.7804
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008157genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding315.7e-1019412346
                          -HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                          +W++Ia++++ gRt++++k++w++
  PGSC0003DMP400008157 19 RWSKIAQHLP-GRTDNEIKNYWRT 41
                          6*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.01E-71748IPR009057Homeodomain-like
CDDcd001676.20E-71941No hitNo description
PROSITE profilePS500906.6091943IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.4E-111942IPR009057Homeodomain-like
PfamPF002491.6E-71941IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
YFPIQLITSL LFPFFWVCRW SKIAQHLPGR TDNEIKNYWR TRVQKHAKQL KCDVNSKQFQ  60
DTLRYLWIPR LVERIQASKI SNNNASSETQ QPVLRTGITE LIPIQLTNNN NNSILITSVK  120
PENSSVVTSS ENSIGTQVSP NQDYYQVNQS DQLWFEDYQA MDQQNNKELW MDNLCNIEDI  180
WSYLEN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008157
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt (NaCl). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755241e-71HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015165205.11e-132PREDICTED: transcription factor MYB108-like, partial
SwissprotQ9FGY39e-37MYB78_ARATH; Transcription factor MYB78
TrEMBLM1A0301e-134M1A030_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000117431e-134(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13972375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.13e-36myb domain protein 78
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]