PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008181
Common NameLOC102581535
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GATA
Protein Properties Length: 169aa    MW: 18464.8 Da    PI: 10.2961
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008181genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.42.3e-193367135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  PGSC0003DMP400008181 33 CVDCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRR 67
                          ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.732763IPR000679Zinc finger, GATA-type
SMARTSM004011.1E-142777IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.37E-132967No hitNo description
Gene3DG3DSA:3.30.50.109.3E-163167IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.60E-133267No hitNo description
PfamPF003204.5E-173367IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403358IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MVDTSDKVQE TGEMIGQNQT PERVSSETNQ KTCVDCGTTK TPLWRGGPAG PKSLCNACGI  60
RSRKKRRALL GLNKDDKKSK KSLSKSVVNH HPQNQSSNSS SSTSSSGEST NNVIVKNECI  120
PYKKRLLHFD REVGLQRPRS NSTHRRKLGE EEQAAFLLMA LSCGSVYA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008181
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754511e-170HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349829.11e-122PREDICTED: GATA transcription factor 16-like
TrEMBLM1A0541e-121M1A054_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000117791e-121(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19992362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.17e-31GATA transcription factor 15
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]