PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008226
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 448aa    MW: 50346.7 Da    PI: 6.7463
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008226genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS478.73e-146264441374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lLl+cA++v++g+le+a+ +L ++s+lasp+gd+mqR+a+yfteALa r++rs+++lykal++++ s   +see+ ++k+f+e++P
  PGSC0003DMP400008226  26 LIHLLLACANHVAAGSLENANIALDHISQLASPSGDTMQRIASYFTEALADRILRSWPGLYKALRSTKLS--VVSEEILVRKMFFEIFP 112
                           689*************************************************************999998..6**************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           +lk++++++NqaI ea+ege++vHi+D+++ ++lQW aLlq L++Rpegpp+lRiTgv++    +ke l ++++ L++ Ae+l++pf+f
  PGSC0003DMP400008226 113 FLKVAFVVTNQAIIEAMEGEKMVHIVDLNAAEPLQWRALLQDLSARPEGPPHLRITGVHQ----QKEVLDQMAHVLTQEAEKLDIPFQF 197
                           ************************************************************....9************************ PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrll..................................................... 214
                           n  v++rle+l++e+Lrvk+gEala+++v+qlh+ll                                                     
  PGSC0003DMP400008226 198 NQ-VVSRLENLDVEKLRVKTGEALAISSVMQLHTLLahdnekksplpskhsngvnlhralvnqntlgeflekdmangcspsndtasssp 285
                           **.7******************************************************************************9988655 PP

                  GRAS 215 .desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                             +++s+  ++d++L+++++lsPkv+vv+eq+++hn+++++er++e+l++y+alfd+le++lpr+s er kvE++llg+ei+n++aceg
  PGSC0003DMP400008226 286 lCSTGST--KIDSFLNALWGLSPKVMVVTEQDSNHNGTTLMERLSESLHFYAALFDCLESTLPRTSLERLKVEKMLLGEEIRNIIACEG 372
                           4444444..459***************************************************************************** PP

                  GRAS 303 aerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                            er+erhe+lekW +r++++GF++vpls++a+ qa++ll+ ++ +gy+++ee+g++v++W+dr+L+svS+Wr
  PGSC0003DMP400008226 373 IERKERHEKLEKWFQRFDTSGFGNVPLSYYAMLQARRLLQSYSCEGYKIKEENGCVVICWQDRALFSVSSWR 444
                           ***********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.9621424IPR005202Transcription factor GRAS
PfamPF035141.0E-14326444IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009739Biological Processresponse to gibberellin
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 448 aa     Download sequence    Send to blast
MSVSPSFGSS NQWLKELKSE ERGLYLIHLL LACANHVAAG SLENANIALD HISQLASPSG  60
DTMQRIASYF TEALADRILR SWPGLYKALR STKLSVVSEE ILVRKMFFEI FPFLKVAFVV  120
TNQAIIEAME GEKMVHIVDL NAAEPLQWRA LLQDLSARPE GPPHLRITGV HQQKEVLDQM  180
AHVLTQEAEK LDIPFQFNQV VSRLENLDVE KLRVKTGEAL AISSVMQLHT LLAHDNEKKS  240
PLPSKHSNGV NLHRALVNQN TLGEFLEKDM ANGCSPSNDT ASSSPLCSTG STKIDSFLNA  300
LWGLSPKVMV VTEQDSNHNG TTLMERLSES LHFYAALFDC LESTLPRTSL ERLKVEKMLL  360
GEEIRNIIAC EGIERKERHE KLEKWFQRFD TSGFGNVPLS YYAMLQARRL LQSYSCEGYK  420
IKEENGCVVI CWQDRALFSV SSWRCRK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4184461381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008226
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755240.0HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349782.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLM1A0980.0M1A098_SOLTU; Uncharacterized protein
TrEMBLM1A0990.0M1A099_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000118390.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]