PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008313
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GRAS
Protein Properties Length: 513aa    MW: 58916.5 Da    PI: 5.1483
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008313genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS283.56.1e-871224971374
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsev 87 
                           lve Ll+ Ae + ++ +  a +lL++  +l+s++g+p++Rl+ yf +AL++r+   +++++ k l     ++ + s ++++a ++ ++ 
  PGSC0003DMP400008313 122 LVEHLLASAEKIGEKLFDSAINLLNECDKLSSKTGNPVERLVYYFSRALRERVDIeMGKNCTKGLGLHGMRDLQeSLRSINACTIAVQD 210
                           57899************************************************87799******977766654449999999999**** PP

                  GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.....egppslRiTgvgspesgskeeleetgerLakfAee 171
                            P+ ++  ++  qaI+e ve+++++Hi+D++i++G+QW  L+qaLa+       ++   l++T++ + +  s++++eetg+rL +fAe+
  PGSC0003DMP400008313 211 MPMCQVVKFAGIQAIVENVENSKKIHIVDLEIKMGVQWTILMQALANDHqhnsqNPLEYLKVTALIDVQ--SRTNVEETGKRLMSFAES 297
                           **********************************************5444564444559********66..****************** PP

                  GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                           l+ p+ f++++++++ dl+ e+L+++p+E+laV +++ l ++     +++++ d ++ ++k++ P++++v+e ea++ns+ F++rf+ea
  PGSC0003DMP400008313 298 LHFPLCFKIVMVEDILDLKKEDLDIDPDESLAVYSQYLLSNMI----TQQDRLDFLMGFIKEMTPRIMIVAEVEANLNSPVFVNRFIEA 382
                           *************************************999998....555556779********************************* PP

                  GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdg 348
                           l y+ alfd +e  + +++++r+ +E+ ++   i+n+va+eg+er++rh t e Wre ++++G++++++s++   qak++++k+  ++ 
  PGSC0003DMP400008313 383 LFYHGALFDLFEDCMKSNESTRKAMEEDVMWHGIRNIVANEGEERTMRHVTIELWREYFKRFGMEEMKMSNSSLYQAKTVVEKFTgKNS 471
                           *************************************************************************************9999 PP

                  GRAS 349 yrveeesgslvlgWkdrpLvsvSaWr 374
                           +++e +++ +++gWk+ pL s+SaW+
  PGSC0003DMP400008313 472 FTLEMNEKFVTIGWKGTPLNSLSAWK 497
                           *************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.41196476IPR005202Transcription factor GRAS
PfamPF035142.1E-84122497IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MQEQNEHDFV TFDDWGFDVE DETTTILHIK ETTDDNKKAK KSLISSLNIL KDYGNGFRKL  60
KGQKIDVVQI SENECTPSVC KLSTEEILRF GGQKFIQSTE FDHPFVNSLC SLSEEESRTV  120
MLVEHLLASA EKIGEKLFDS AINLLNECDK LSSKTGNPVE RLVYYFSRAL RERVDIEMGK  180
NCTKGLGLHG MRDLQESLRS INACTIAVQD MPMCQVVKFA GIQAIVENVE NSKKIHIVDL  240
EIKMGVQWTI LMQALANDHQ HNSQNPLEYL KVTALIDVQS RTNVEETGKR LMSFAESLHF  300
PLCFKIVMVE DILDLKKEDL DIDPDESLAV YSQYLLSNMI TQQDRLDFLM GFIKEMTPRI  360
MIVAEVEANL NSPVFVNRFI EALFYHGALF DLFEDCMKSN ESTRKAMEED VMWHGIRNIV  420
ANEGEERTMR HVTIELWREY FKRFGMEEMK MSNSSLYQAK TVVEKFTGKN SFTLEMNEKF  480
VTIGWKGTPL NSLSAWKFHK TSTFHRANYL TL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3815249733375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008313
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754510.0HG975451.1 Solanum pennellii chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006349956.10.0PREDICTED: DELLA protein RGL1-like
TrEMBLM1A0F90.0M1A0F9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000119540.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-41RGA-like 2
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]