PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400008401

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

YABBY

Protein Properties

Length: 173aa MW: 19122.7 Da PI: 7.9075

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400008401	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	193.6	8.9e-60	21	171	6	159
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll l +++ h s ++llee +++ n+ +n++++ ++ PGSC0003DMP400008401 21 PSEQLCYVHCNVCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPGWLLPSTNHHHHFGHTYFSPSHNLLEEISNATPNFLMNQSNSAHEFV 109 689************************************976666666555555555555556888888888888888777777776 PP YABBY 95 svsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 + ++ + +++pr+pp ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaakn PGSC0003DMP400008401 110 QLPA----RPGFDDLPRPPPvINRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKN 171 6666....457889999999789****************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	1.2E-56	21	171	IPR006780	YABBY protein
SuperFamily	SSF47095	2.09E-6	123	169	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MSSSNSLSLD HLPPPPPPPP PSEQLCYVHC NVCDTVLAVS VPCTSLFKTV TVRCGHCTNL 60 LPGWLLPSTN HHHHFGHTYF SPSHNLLEEI SNATPNFLMN QSNSAHEFVQ LPARPGFDDL 120 PRPPPVINRP PEKRQRVPSA YNRFIKEEIQ RIKAGNPDIS HREAFSAAAK NV*

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to be associated with phloem cell differentiation. {ECO:0000269\|PubMed:17676337}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400008401

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667760	0.0	KJ667760.1 Solanum sisymbriifolium YAB1 protein mRNA, complete cds.
GenBank	KJ667761	0.0	KJ667761.1 Solanum aethiopicum YAB1 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006355492.1	1e-123	PREDICTED: protein YABBY 4
Swissprot	A2X7Q3	1e-55	YAB4_ORYSI; Protein YABBY 4
Swissprot	Q6H668	1e-55	YAB4_ORYSJ; Protein YABBY 4
TrEMBL	M1A0N8	1e-122	M1A0N8_SOLTU; Uncharacterized protein
TrEMBL	M1A0N9	1e-122	M1A0N9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400012083	1e-122	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00180.1	4e-46	YABBY family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400008401

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Yang C,Ma Y,Li J The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway. J. Exp. Bot., 2016. 67(18): p. 5545-5556 [PMID:27578842]