PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008402
Common NameLOC102577797
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family YABBY
Protein Properties Length: 220aa    MW: 24481.7 Da    PI: 7.6503
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008402genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY220.45.4e-68211826170
                 YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                            seq+Cyv+Cn C+t+lavsvP tslfk+vtvrCGhCt+ll   l  +++      h   s  ++llee  +++ n+ +n++++ ++  
  PGSC0003DMP400008402  21 PSEQLCYVHCNVCDTVLAVSVPCTSLFKTVTVRCGHCTNLLPGWLLPSTNHHHHFGHTYFSPSHNLLEEISNATPNFLMNQSNSAHEFV 109
                           689**************************************976666666555555555555556888888888888888777777776 PP

                 YABBY  95 svsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                           + ++    +   +++pr+pp ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+i fgl
  PGSC0003DMP400008402 110 QLPA----RPGFDDLPRPPPvINRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIQFGL 182
                           6666....457889999999789****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.8E-6521182IPR006780YABBY protein
SuperFamilySSF470952.36E-8123176IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.107.6E-5130176IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSSSNSLSLD HLPPPPPPPP PSEQLCYVHC NVCDTVLAVS VPCTSLFKTV TVRCGHCTNL  60
LPGWLLPSTN HHHHFGHTYF SPSHNLLEEI SNATPNFLMN QSNSAHEFVQ LPARPGFDDL  120
PRPPPVINRP PEKRQRVPSA YNRFIKEEIQ RIKAGNPDIS HREAFSAAAK NWAHFPHIQF  180
GLMPDQTVKR TNVRQQDGED VLMKDGLFNT SANVSVSPY*
Functional Description ? help Back to Top
Source Description
UniProtSeems to be associated with phloem cell differentiation. {ECO:0000269|PubMed:17676337}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008402
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6677600.0KJ667760.1 Solanum sisymbriifolium YAB1 protein mRNA, complete cds.
GenBankKJ6677610.0KJ667761.1 Solanum aethiopicum YAB1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355492.11e-162PREDICTED: protein YABBY 4
SwissprotA2X7Q31e-75YAB4_ORYSI; Protein YABBY 4
SwissprotQ6H6681e-75YAB4_ORYSJ; Protein YABBY 4
TrEMBLM1A0N91e-161M1A0N9_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000120831e-162(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00180.11e-67YABBY family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Yang C,Ma Y,Li J
    The rice YABBY4 gene regulates plant growth and development through modulating the gibberellin pathway.
    J. Exp. Bot., 2016. 67(18): p. 5545-5556
    [PMID:27578842]