PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008454
Common NameLOC102593706
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 299aa    MW: 33962.4 Da    PI: 8.8324
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008454genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.8e-05167189123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++C++C k+F+++  L +H   H
  PGSC0003DMP400008454 167 HQCGICYKVFKTSQALGSHKTIH 189
                           79*****************9887 PP
2zf-C2H210.90.0014222244123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           ++Cp Cgk F +   L  H r+H
  PGSC0003DMP400008454 222 HECPSCGKFFQSGQALGGHKRSH 244
                           79**********99999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.33E-9326No hitNo description
SMARTSM003550.043426IPR015880Zinc finger, C2H2-like
PfamPF139123.0E-7427IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159431IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SuperFamilySSF576671.33E-9162189No hitNo description
Gene3DG3DSA:3.30.160.603.9E-4165192IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64167194IPR007087Zinc finger, C2H2
SMARTSM003550.32167189IPR015880Zinc finger, C2H2-like
PfamPF139125.4E-6167189IPR007087Zinc finger, C2H2
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.4E-6206244IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.78E-6218245No hitNo description
SMARTSM003550.35222244IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-10222244IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.699222249IPR007087Zinc finger, C2H2
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MEKHKCKLCS KKFLNGKALG GHMRSHLIPL PLPPKTPPLN QDSGGRSEST LSLCSSENQE  60
DKVVEEKDFN YGLRENPKKS FRMIDPEFLE DGYVVQDRES ETESEKNTEN RRRSKRNRRM  120
VENDERIEEV KVKIADFRSL NLYSDDADIA MCLMMLSTDS KSKPKQHQCG ICYKVFKTSQ  180
ALGSHKTIHK NRNNYDNDEE KARKISSKRK LKLVSHVDEK LHECPSCGKF FQSGQALGGH  240
KRSHLVVRSS STITGSCSST NSANLPNRFI DLNMPAPLEV NEFCQPDFSA VKFQQEFA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008454
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-136HG975447.1 Solanum pennellii chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006355440.10.0PREDICTED: zinc finger protein ZAT1
TrEMBLM1A0T50.0M1A0T5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000121540.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10952480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-22C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]