PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008679
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 328aa    MW: 37390.9 Da    PI: 5.7654
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008679genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.11.4e-38621611100
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                           aCaaCk++rrkCa+dCvlapyfp++++++f n+hklFG+sn++k++++l++  +++am+++++++++ra+dPv G++++i++lq++++ 
  PGSC0003DMP400008679  62 ACAACKYQRRKCAPDCVLAPYFPHDRQRQFLNAHKLFGVSNITKIIRHLDQPFKDEAMRTIIFQSDVRANDPVGGCYRIIRDLQRHIDY 150
                           7**************************************************************************************** PP

                DUF260  90 lkaelallkee 100
                            kael+ + ++
  PGSC0003DMP400008679 151 CKAELDIVIHQ 161
                           *****988766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.08561162IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-3662157IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MQNQMTSFTT PNNNNNNNIP IHQTPHTFIT DHNNLNHNKY TKRVHNNNDK NVLLRVSGAG  60
QACAACKYQR RKCAPDCVLA PYFPHDRQRQ FLNAHKLFGV SNITKIIRHL DQPFKDEAMR  120
TIIFQSDVRA NDPVGGCYRI IRDLQRHIDY CKAELDIVIH QLAYCRAQAV AASEQQQILT  180
DHHATEESFN DNNCDGVVNQ ADALVNNNNN ASSYDQQPID QYNPHDSFYN HPRCDQQAED  240
DQQYDGIQDG QLDLTDINFP WSLHEQESTS TSAPNSMMKQ LSVNDQFDNI KDPILEGISG  300
FGSFEHDQTF DQHSYSTREQ TPIEGRG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-26581567105LOB family transfactor Ramosa2.1
5ly0_B1e-26581567105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008679
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015079305.10.0LOB domain-containing protein 22
TrEMBLM1A1B20.0M1A1B2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000124980.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA99262126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.12e-53LOB domain-containing protein 22
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]