PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008687
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family C2H2
Protein Properties Length: 387aa    MW: 44275.4 Da    PI: 9.1782
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008687genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-057092123
                          EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                          + C++C+k F r  nL+ H r H
  PGSC0003DMP400008687 70 FFCEICNKGFQRDQNLQLHRRGH 92
                          67*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.5E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.83E-66992No hitNo description
PfamPF121711.9E-57092IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0447092IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.727092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355100112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.9E-4135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.83E-6142167No hitNo description
SMARTSM00355150147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSIVTCEEAA ASLSSSSNMN NDTNGAFCYP PQHQLVTQQI KKKRNQPGNP DPEAEVIALS  60
PKTLVATNRF FCEICNKGFQ RDQNLQLHRR GHNLPWKLKK RENKEVVRKK VYICPESSCV  120
HHDPSRALGD LTGIKKHFSR KHGEKKWKCE KCSKRYAVQS DCKAHFKTCG TREYKCECGT  180
IFSRRDSFIT HRAFCETLAM ESARSVINGR NPTIFSPQLN LQFQQPHFFN SHEQIQATTF  240
PMKKEQQSSD FRHIEIPPWL ITTNSQPFQL GAINHGPSPL SNFSSSSIFP ATTRLDQQYT  300
QSGHKDLNLH HPNPNLRGNE EFNSPILNIK FIDIFELFLF CLIVLVLDMS RTYIRLRFNG  360
RIRCGLSSTH FCNCIAAESS TVWCYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-30143204364Zinc finger protein JACKDAW
5b3h_F3e-30143204364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196109KLKKRENKEVVRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008687
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankX823280.0X82328.1 S.tuberosum mRNA for DNA/RNA binding protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006357380.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X1
RefseqXP_006357381.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X2
RefseqXP_006357382.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X3
RefseqXP_015168881.10.0PREDICTED: zinc finger protein NUTCRACKER-like isoform X3
TrEMBLM1A1B80.0M1A1B8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000125040.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13810.12e-98indeterminate(ID)-domain 11
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]