PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400008735
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bZIP
Protein Properties Length: 141aa    MW: 16751.9 Da    PI: 8.5144
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400008735genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_141.52.8e-1355112562
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                           ++ rrk++NRe+ArrsR+RKk  +e+ +e v+ L+a N++Lk++l   +  +++ +se
  PGSC0003DMP400008735  55 RKRRRKISNRESARRSRLRKKNHLENVTEQVDRLKAVNRDLKNRLWLATHRCQAAQSE 112
                           6789****************************************99999999987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.4E-1151115IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1703.6E-95399No hitNo description
PROSITE profilePS5021710.3125399IPR004827Basic-leucine zipper domain
PfamPF001705.5E-1055107IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.27E-955104No hitNo description
CDDcd147025.18E-1356107No hitNo description
PROSITE patternPS0003605873IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MMFEDPVHYH LPVLEDVFYS PSDFHDLFSF LETELPVQST SGSETNRLVF SLEERKRRRK  60
ISNRESARRS RLRKKNHLEN VTEQVDRLKA VNRDLKNRLW LATHRCQAAQ SETDRLRLES  120
FVLQQYLVEL HESLNSMQLH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15458RKRRR
26773RRSRLRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400008735
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755161e-176HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028065855.18e-41basic leucine zipper 4-like
TrEMBLM1A1G05e-97M1A1G0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000125758e-98(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28202251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49760.14e-20basic leucine-zipper 5
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]