PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009570
Common NameLOC102584731
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Trihelix
Protein Properties Length: 344aa    MW: 37677.4 Da    PI: 9.916
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009570genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.52.6e-1648132186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                           +W++  v +L+ea++ ++   +r+klk+++We+v+k++     +++  ++++qCk+k+e+++kry+ + +++ +      s++p++ +l
  PGSC0003DMP400009570  48 EWSEGAVSCLLEAYEAKWILRNRAKLKGQDWEDVAKHVsarvNSTKSPKTQTQCKNKIESMKKRYRSESATAADA-----SSWPLYPRL 131
                           5***********************************9987778888999999******************99984.....57****999 PP

              trihelix  86 e 86 
                           +
  PGSC0003DMP400009570 132 D 132
                           6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.3E-1946132No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MDKEAGNHHH HQNQNHGISN KDEFSPRIKP PQNYHVATGN SDRLKRDEWS EGAVSCLLEA  60
YEAKWILRNR AKLKGQDWED VAKHVSARVN STKSPKTQTQ CKNKIESMKK RYRSESATAA  120
DASSWPLYPR LDLLLRGNNA SAASSSLIPP PLPPAAPPNT NCVIDAVEPT QPPIVLPPPP  180
PPLPPSPALP IGNGDQNSHG SNGLDRGIKE DILMDAKLSD NAAAADHKNA TATNSSSTPA  240
LYSDNKSKSK LRSKNKRKRA VEGWEIGESI RLLAEVVVRS EQARMETMRD IERMRAEAEA  300
KRGEMDLKRT EIIANTQLEI AKLFASITKG SVDSSLRIGR SSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009570
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006347664.10.0PREDICTED: trihelix transcription factor ASIL2 isoform X2
TrEMBLM1A3D60.0M1A3D6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000138290.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.14e-91sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]