PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009655
Common NameLOC102579962
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family HD-ZIP
Protein Properties Length: 226aa    MW: 26374.3 Da    PI: 4.6195
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009655genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.5e-202373656
                          S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          +f++eq+++Le++F+++ ++  +++ eLA+ lgL+ rqV +WFqNrRa++k
  PGSC0003DMP400009655 23 RFSDEQVKVLESMFKQKTTLEPSKKLELARDLGLQPRQVAIWFQNRRARWK 73
                          69************************************************9 PP
2HD-ZIP_I/II120.77.3e-3922111493
           HD-ZIP_I/II   4 rrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                           +r+s+eqvk+LE++F+++++Lep++K elar+Lglqprqva+WFqnrRAR+ktkqlE++y++Lk+++d+l+ + e+L+ke+e+L ++l+
  PGSC0003DMP400009655  22 KRFSDEQVKVLESMFKQKTTLEPSKKLELARDLGLQPRQVAIWFQNRRARWKTKQLEHEYRRLKDEFDNLAIKFESLKKEKESLLKQLQ 110
                           8**************************************************************************************98 PP

           HD-ZIP_I/II  93 e 93 
                           e
  PGSC0003DMP400009655 111 E 111
                           7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.09E-191377IPR009057Homeodomain-like
PROSITE profilePS5007117.1351575IPR001356Homeobox domain
SMARTSM003899.5E-181779IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-202381IPR009057Homeodomain-like
PfamPF000461.4E-172373IPR001356Homeobox domain
CDDcd000864.60E-162376No hitNo description
PRINTSPR000313.7E-64655IPR000047Helix-turn-helix motif
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
PRINTSPR000313.7E-65571IPR000047Helix-turn-helix motif
PfamPF021834.6E-1375116IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEVAEDSSPV ECSKKKSHED GKRFSDEQVK VLESMFKQKT TLEPSKKLEL ARDLGLQPRQ  60
VAIWFQNRRA RWKTKQLEHE YRRLKDEFDN LAIKFESLKK EKESLLKQLQ ELSDQMENNH  120
AGCSRSQDSI DSEIYTSSEN IEAEVDVKDN IPGCINTSLD HERIKGADSD IEGTLFEHLR  180
WKEEEEFWNM EELGDSFLGS PEHWYAVGPG YSFDLSCENS KWWEF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11317KKKSH
26775RRARWKTKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009655
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754451e-157HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBankHG9755181e-157HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006367352.11e-165PREDICTED: homeobox-leucine zipper protein ATHB-12-like
TrEMBLM1A3K21e-164M1A3K2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000139681e-165(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.23e-31homeobox 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]