PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400009905
Common NameLOC102604472
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family MYB_related
Protein Properties Length: 143aa    MW: 15811.1 Da    PI: 4.5609
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400009905genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14e-081058348
                          SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqkyl 48
                           W+ eE++ + +a++++  +    +W+  a++++ ++t  ++k+++q +l
  PGSC0003DMP400009905 10 VWSREEEKAFENAIALHWVEdseqQWEQFASMVP-TKTIDELKEHYQLLL 58
                          6*****************99**************.************875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.6E-4760IPR001005SANT/Myb domain
PfamPF002495.9E-61057IPR001005SANT/Myb domain
PROSITE profilePS500906.5041158IPR017877Myb-like domain
CDDcd001672.29E-61158No hitNo description
Gene3DG3DSA:1.10.10.603.4E-41158IPR009057Homeodomain-like
SuperFamilySSF466893.29E-81164IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MSPSDSSSVV WSREEEKAFE NAIALHWVED SEQQWEQFAS MVPTKTIDEL KEHYQLLLED  60
VAAIEAGQVP IPNYKGEEAS SSSTKEVNLG YPGSVDGRRS NCGYSNGFSG TTHDPIGHGG  120
KGNSRSEQER RKGIPWTEEE HR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-14175174RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00191DAPTransfer from AT1G49010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400009905
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006341637.11e-100PREDICTED: transcription factor DIVARICATA
TrEMBLM1A4201e-100M1A420_SOLTU; Uncharacterized protein
TrEMBLM1A4214e-99M1A421_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000143501e-100(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.12e-32MYB family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]