PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400010074

Common Name

BRC1A, STBRC1A

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

TCP

Protein Properties

Length: 215aa MW: 24141 Da PI: 9.7002

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400010074	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	94.5	2.2e-29	1	129	22	136
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesssssasnsssgkaaksa 94 +Rls+e+a++fF Lqd LGfdk+skt+eWLl+++k a+ +l++ ss++++ce s + +s+ + ++ ++ PGSC0003DMP400010074 1 MRLSLEIARKFFNLQDLLGFDKASKTVEWLLTKSKSAVNDLVQKiskgkcsastnpnigvVSSPSESCEVISGVIDESAAT--NNTHKQ 87 8*****************************************8887776655555555333334553333333333222..222222 PP TCP 95 akskksqksaasalnlakesrakarararertrekmriknkl 136 +k+kks ++a + +akesr +arararert+ k++++n++ PGSC0003DMP400010074 88 QKKKKSIRRAIFHPVVAKESRTEARARARERTKIKKSLNNNN 129 344444444445688999*************999998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.2E-29	1	123	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.88	1	41	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.331	105	122	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MRLSLEIARK FFNLQDLLGF DKASKTVEWL LTKSKSAVND LVQKISKGKC SASTNPNIGV 60 VSSPSESCEV ISGVIDESAA TNNTHKQQKK KKSIRRAIFH PVVAKESRTE ARARARERTK 120 IKKSLNNNNG DQSMAPDEDL TRSLGSWSTT FEDHQSGIQA YNNTNNIMNA VDNFNLVDTS 180 NWSPFMFNYH QINTEISQEH QLTNFQYPGK LWEA*

Function -- GeneRIF ? help Back to Top
A Recently Evolved Alternative Splice Site in the BRANCHED1a Gene Controls Potato Plant Architecture. [PMID: 26119747] The BRC1a(Long) C-terminal region has a strong activation domain, whereas that of BRC1a(Short) lacks an activation domain and is predicted to form an amphipathic helix, the H domain, which prevents protein nuclear targeting. [PMID: 26119747]

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400010074

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HM597226	0.0	HM597226.1 Solanum tuberosum BRANCHED1A isoform 1 (BRC1A) mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006341644.1	1e-158	PREDICTED: transcription factor BRC1a isoform X1
TrEMBL	F6KB94	1e-157	F6KB94_SOLTU; BRANCHED1A isoform 1
TrEMBL	M1A4H4	1e-158	M1A4H4_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400014572	1e-143	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18550.1	3e-17	TCP family protein

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400010074
Entrez Gene	102578271

Publications ? help Back to Top
Mart Role of tomato BRANCHED1-like genes in the control of shoot branching. Plant J., 2011. 67(4): p. 701-14 [PMID:21554455] Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Nicolas M,Rodr A Recently Evolved Alternative Splice Site in the BRANCHED1a Gene Controls Potato Plant Architecture. Curr. Biol., 2015. 25(14): p. 1799-809 [PMID:26119747]