PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010124
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family LBD
Protein Properties Length: 245aa    MW: 26450.9 Da    PI: 6.8742
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010124genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.51e-284107199
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                           +C++C+vlr++C+++C + p++     p++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +P+yG++g++++++
  PGSC0003DMP400010124   4 SCNGCRVLRKGCNEKCSIKPCLqwiqsPEAQSNATLFLAKFYGRAGLLNLINSGPDHLRPAIFRSLLYEACGRIVNPIYGSTGLLTSGN 92 
                           6**************************************************************************************** PP

                DUF260  85 qqleqlkaelallke 99 
                           + l+q+++e++l ++
  PGSC0003DMP400010124  93 WPLCQAAVEAVLNGA 107
                           *********998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.2283109IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-234102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MRLSCNGCRV LRKGCNEKCS IKPCLQWIQS PEAQSNATLF LAKFYGRAGL LNLINSGPDH  60
LRPAIFRSLL YEACGRIVNP IYGSTGLLTS GNWPLCQAAV EAVLNGAPIV KLSVDSAADA  120
TSPSLKACDI RHVSRENNSD PDLHKVKSKT RFKRVSAKPE PRNQSPDVDD AARVMWSWCH  180
KEEEEAVGSP SLNSGLSQQR TEEPSREGES GDVDSGSVET VEAFPASSDV GLELTLGLLP  240
LMRS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010124
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0132140.0BT013214.1 Lycopersicon esculentum clone 134425F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001305564.11e-179LOB domain-containing protein 41-like
SwissprotQ9M8861e-78LBD41_ARATH; LOB domain-containing protein 41
TrEMBLM1A4L31e-179M1A4L3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000146301e-180(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-77LOB domain-containing protein 41
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]