PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PGSC0003DMP400010272

Organism

Solanum tuberosum

Taxonomic ID

4113

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum

Family

Nin-like

Protein Properties

Length: 699aa MW: 75820.6 Da PI: 6.661

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PGSC0003DMP400010272	genome	PGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93.1	2.1e-29	291	342	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ PGSC0003DMP400010272 291 AEKTISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 342 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.643	279	362	IPR003035	RWP-RK domain
Pfam	PF02042	2.2E-26	294	342	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.71E-19	602	688	No hit	No description
PROSITE profile	PS51745	21.981	603	685	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.6E-22	603	684	No hit	No description
SMART	SM00666	7.7E-24	603	685	IPR000270	PB1 domain
CDD	cd06407	8.52E-31	604	684	No hit	No description
Pfam	PF00564	6.2E-18	604	684	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence Send to blast
MGYMNQICNE GRQNALVDIL EILTAVCETY KLPLAQTWVP CRHRSVLADG GGLKKSCSSF 60 DGSCMGQICM STTDVAFYVV DAHMWGFRDA CAEHHLQRGQ GVAGRAYASR KSCYCEDITK 120 FCKTEYPLVH YARMFGLTSC FAICLRSSHT ANDDYILEFF LPPNSGDYSD QQALLNSLLL 180 TMKQHFRSLS IASGGELEHD WSSVEIIQAS MEEKIDAKPE SVPTPITSPQ LTSLPNGWMH 240 LDPVGEQQSA VGSNVSKGAR STSGTGEAPN HVSNSDNKTS GKKSERKRGK AEKTISLEVL 300 QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK CVIESVQGAE 360 GAFTLTSLAP NSLPAAVSSI SWPAGANVSN LPSSPSSKPS VFPGEKNEFS HHGTPESHIE 420 AEPSNQMLGG RVARKEEFTP TQNGFLHAEG TRKSRTGSVS REVSAGTPTS HGSCQGSPCA 480 GNEFSPQNEL VNSPAHESCM KVGGSLEAAR QTTTEINLSS AFLMPQPIIP KHTQEPFGGM 540 LVEDAGSSHD LRNLCLPRDA LVDERVPDYN FTIPPVSDAT AKDPVYVPPD AIQQYSAWPE 600 VTSVTIKATY KEDIIRFRLC LNSGTVKLKE EVAKRLKLEL GTIDIKYLDD DLELVPISCD 660 ADLQECVDIS RSSGSSIVRL LIHDIMSNLG SSCESSGK*

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence Send to blast

MGYMNQICNE GRQNALVDIL EILTAVCETY KLPLAQTWVP CRHRSVLADG GGLKKSCSSF  60
DGSCMGQICM STTDVAFYVV DAHMWGFRDA CAEHHLQRGQ GVAGRAYASR KSCYCEDITK  120
FCKTEYPLVH YARMFGLTSC FAICLRSSHT ANDDYILEFF LPPNSGDYSD QQALLNSLLL  180
TMKQHFRSLS IASGGELEHD WSSVEIIQAS MEEKIDAKPE SVPTPITSPQ LTSLPNGWMH  240
LDPVGEQQSA VGSNVSKGAR STSGTGEAPN HVSNSDNKTS GKKSERKRGK AEKTISLEVL  300
QQYFAGSLKD AAKSLGVCPT TMKRICRQHG ISRWPSRKIN KVNRSLSKLK CVIESVQGAE  360
GAFTLTSLAP NSLPAAVSSI SWPAGANVSN LPSSPSSKPS VFPGEKNEFS HHGTPESHIE  420
AEPSNQMLGG RVARKEEFTP TQNGFLHAEG TRKSRTGSVS REVSAGTPTS HGSCQGSPCA  480
GNEFSPQNEL VNSPAHESCM KVGGSLEAAR QTTTEINLSS AFLMPQPIIP KHTQEPFGGM  540
LVEDAGSSHD LRNLCLPRDA LVDERVPDYN FTIPPVSDAT AKDPVYVPPD AIQQYSAWPE  600
VTSVTIKATY KEDIIRFRLC LNSGTVKLKE EVAKRLKLEL GTIDIKYLDD DLELVPISCD  660
ADLQECVDIS RSSGSSIVRL LIHDIMSNLG SSCESSGK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	PGSC0003DMP400010272

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975447	0.0	HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBank	HG975520	0.0	HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015166334.1	0.0	PREDICTED: protein NLP7-like isoform X3
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	M1A4Z3	0.0	M1A4Z3_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400014837	0.0	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	PGSC0003DMP400010272

Publications ? help Back to Top
Xu X, et al. Genome sequence and analysis of the tuber crop potato. Nature, 2011. 475(7355): p. 189-95 [PMID:21743474] Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]