PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010275
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Nin-like
Protein Properties Length: 378aa    MW: 40752.9 Da    PI: 6.5065
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010275genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK35.32.3e-111213252
                RWP-RK 32 LKriCRqyGIkRWPhRkiksl 52
                          +KriCRq+GI+RWP+Rki+++
  PGSC0003DMP400010275  1 MKRICRQHGISRWPSRKINKV 21
                          7******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151911.57141IPR003035RWP-RK domain
PfamPF020422.9E-9121IPR003035RWP-RK domain
SuperFamilySSF542776.45E-20281367No hitNo description
SMARTSM006667.7E-24282364IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2409.9E-23282363No hitNo description
PROSITE profilePS5174521.981282364IPR000270PB1 domain
CDDcd064075.94E-32283363No hitNo description
PfamPF005642.4E-18283363IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MKRICRQHGI SRWPSRKINK VNRSLSKLKC VIESVQGAEG AFTLTSLAPN SLPAAVSSIS  60
WPAGANVSNL PSSPSSKPSV FPGEKNEFSH HGTPESHIEA EPSNQMLGGR VARKEEFTPT  120
QNGFLHAEGT RKSRTGSVSR EVSAGTPTSH GSCQGSPCAG NEFSPQNELV NSPAHESCMK  180
VGGSLEAARQ TTTEINLSSA FLMPQPIIPK HTQEPFGGML VEDAGSSHDL RNLCLPRDAL  240
VDERVPDYNF TIPPVSDATA KDPVYVPPDA IQQYSAWPEV TSVTIKATYK EDIIRFRLCL  300
NSGTVKLKEE VAKRLKLELG TIDIKYLDDD LELVPISCDA DLQECVDISR SSGSSIVRLL  360
IHDIMSNLGS SCESSGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010275
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754470.0HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352238.10.0PREDICTED: protein NLP7-like isoform X1
RefseqXP_015166334.10.0PREDICTED: protein NLP7-like isoform X3
TrEMBLM1A4Z30.0M1A4Z3_SOLTU; Uncharacterized protein
TrEMBLM1A4Z60.0M1A4Z6_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000148370.0(Solanum tuberosum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24020.11e-78NIN like protein 7
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]