PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400010277
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family Dof
Protein Properties Length: 243aa    MW: 27144.2 Da    PI: 8.2608
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400010277genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof120.17.8e-383594463
                zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                          + ++cprC+stntkfCyynnyslsqPr+fCk+CrryWt GG+lrn+P+Gg +rk+kksss
  PGSC0003DMP400010277 35 ALKNCPRCNSTNTKFCYYNNYSLSQPRFFCKNCRRYWTDGGSLRNIPIGGVSRKSKKSSS 94
                          5679****************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027011.0E-323691IPR003851Zinc finger, Dof-type
PROSITE profilePS5088427.813791IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-213887IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVVKSMEEII VPKNTNYTRK IRPHQQQQKQ QNDQALKNCP RCNSTNTKFC YYNNYSLSQP  60
RFFCKNCRRY WTDGGSLRNI PIGGVSRKSK KSSSNNIMKN NLISPKIQDI NNNTPNNKGV  120
DQDLNLDFSS DFKIISELIQ VPNNNSFMPI MPSMSDPNSI YLFSSDLDHG LIGSSSTSDG  180
GYECNNIIQD LQVCTTTTTT STTTSGGILF PFEDLKQVSN TSEQSRDGES SNGYWDVILG  240
GK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400010277
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755200.0HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006352301.21e-178PREDICTED: dof zinc finger protein DOF4.6-like
TrEMBLM1A4Z81e-177M1A4Z8_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000148431e-178(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.34e-34Dof family protein
Publications ? help Back to Top
  1. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]